Hb_003964_040

Information

Type -
Description -
Location Contig3964: 65214-67288
Sequence    

Annotation

kegg
ID rcu:RCOM_1621060
description ATP binding protein, putative
nr
ID XP_012067757.1
description PREDICTED: uncharacterized protein LOC105630528 [Jatropha curcas]
swissprot
ID Q9LDD4
description AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana GN=ARID2 PE=2 SV=1
trembl
ID A0A067LB22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15691 PE=4 SV=1
Gene Ontology
ID GO:0005488
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39569: 65031-69046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003964_040 0.0 - - PREDICTED: uncharacterized protein LOC105630528 [Jatropha curcas]
2 Hb_022092_030 0.1011482518 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
3 Hb_005214_140 0.1094737132 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
4 Hb_028928_010 0.114700298 - - hypothetical protein CISIN_1g0030132mg, partial [Citrus sinensis]
5 Hb_000210_250 0.1159067124 - - PREDICTED: testis-expressed sequence 10 protein isoform X1 [Jatropha curcas]
6 Hb_001488_020 0.1184593317 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
7 Hb_002259_170 0.119055404 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]
8 Hb_009658_030 0.1204767294 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
9 Hb_001279_040 0.1205329834 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
10 Hb_009288_010 0.1209907797 desease resistance Gene Name: Clp_N ERD1 protein, chloroplast precursor, putative [Ricinus communis]
11 Hb_001008_130 0.1218317177 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]
12 Hb_000567_230 0.1241988296 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
13 Hb_003417_040 0.1248036752 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
14 Hb_002157_080 0.1267543812 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
15 Hb_033312_130 0.1268332364 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
16 Hb_001478_010 0.1281974421 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
17 Hb_003125_170 0.1287184593 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
18 Hb_000805_100 0.1292984675 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_000340_040 0.1301022945 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]
20 Hb_000538_280 0.1304084056 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]

Gene co-expression network

sample Hb_003964_040 Hb_003964_040 Hb_022092_030 Hb_022092_030 Hb_003964_040--Hb_022092_030 Hb_005214_140 Hb_005214_140 Hb_003964_040--Hb_005214_140 Hb_028928_010 Hb_028928_010 Hb_003964_040--Hb_028928_010 Hb_000210_250 Hb_000210_250 Hb_003964_040--Hb_000210_250 Hb_001488_020 Hb_001488_020 Hb_003964_040--Hb_001488_020 Hb_002259_170 Hb_002259_170 Hb_003964_040--Hb_002259_170 Hb_001226_140 Hb_001226_140 Hb_022092_030--Hb_001226_140 Hb_000340_040 Hb_000340_040 Hb_022092_030--Hb_000340_040 Hb_005511_140 Hb_005511_140 Hb_022092_030--Hb_005511_140 Hb_000169_020 Hb_000169_020 Hb_022092_030--Hb_000169_020 Hb_000567_230 Hb_000567_230 Hb_022092_030--Hb_000567_230 Hb_003125_220 Hb_003125_220 Hb_022092_030--Hb_003125_220 Hb_000270_190 Hb_000270_190 Hb_005214_140--Hb_000270_190 Hb_001257_030 Hb_001257_030 Hb_005214_140--Hb_001257_030 Hb_004044_050 Hb_004044_050 Hb_005214_140--Hb_004044_050 Hb_001817_170 Hb_001817_170 Hb_005214_140--Hb_001817_170 Hb_001329_250 Hb_001329_250 Hb_005214_140--Hb_001329_250 Hb_000103_340 Hb_000103_340 Hb_005214_140--Hb_000103_340 Hb_010672_020 Hb_010672_020 Hb_028928_010--Hb_010672_020 Hb_028928_010--Hb_001817_170 Hb_028928_010--Hb_000567_230 Hb_000705_230 Hb_000705_230 Hb_028928_010--Hb_000705_230 Hb_002272_030 Hb_002272_030 Hb_028928_010--Hb_002272_030 Hb_004137_020 Hb_004137_020 Hb_028928_010--Hb_004137_020 Hb_000521_330 Hb_000521_330 Hb_000210_250--Hb_000521_330 Hb_009296_070 Hb_009296_070 Hb_000210_250--Hb_009296_070 Hb_000189_600 Hb_000189_600 Hb_000210_250--Hb_000189_600 Hb_001377_190 Hb_001377_190 Hb_000210_250--Hb_001377_190 Hb_002007_150 Hb_002007_150 Hb_000210_250--Hb_002007_150 Hb_000617_230 Hb_000617_230 Hb_000210_250--Hb_000617_230 Hb_004324_360 Hb_004324_360 Hb_001488_020--Hb_004324_360 Hb_000270_170 Hb_000270_170 Hb_001488_020--Hb_000270_170 Hb_001488_020--Hb_001817_170 Hb_006100_020 Hb_006100_020 Hb_001488_020--Hb_006100_020 Hb_003758_010 Hb_003758_010 Hb_001488_020--Hb_003758_010 Hb_073171_070 Hb_073171_070 Hb_001488_020--Hb_073171_070 Hb_009288_010 Hb_009288_010 Hb_002259_170--Hb_009288_010 Hb_000452_030 Hb_000452_030 Hb_002259_170--Hb_000452_030 Hb_001269_370 Hb_001269_370 Hb_002259_170--Hb_001269_370 Hb_001511_090 Hb_001511_090 Hb_002259_170--Hb_001511_090 Hb_000506_110 Hb_000506_110 Hb_002259_170--Hb_000506_110 Hb_000137_010 Hb_000137_010 Hb_002259_170--Hb_000137_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.31118 12.1762 8.85028 10.1226 2.98834 3.04588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.13248 6.11505 7.10482 6.18347 15.9126

CAGE analysis