Hb_000809_180

Information

Type -
Description -
Location Contig809: 144452-149659
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000809_180 0.0 - - -
2 Hb_000823_030 0.1282388905 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
3 Hb_001953_120 0.1291120319 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
4 Hb_004236_010 0.1295986572 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
5 Hb_088144_020 0.131554979 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
6 Hb_004032_040 0.136673327 - - unknown [Medicago truncatula]
7 Hb_001006_340 0.1367073179 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
8 Hb_000352_260 0.1379663062 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
9 Hb_001172_140 0.1404373982 - - hypothetical protein POPTR_0014s17790g [Populus trichocarpa]
10 Hb_000608_230 0.1408159981 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
11 Hb_000455_130 0.1425093041 - - PREDICTED: aspartic proteinase A1-like isoform X1 [Jatropha curcas]
12 Hb_000009_120 0.1439008819 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
13 Hb_001171_030 0.1441240937 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
14 Hb_005357_260 0.1452376441 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
15 Hb_003142_040 0.1463907294 - - Sf3a3 [Gossypium arboreum]
16 Hb_002968_070 0.1468079761 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
17 Hb_004411_030 0.1473303342 - - hypothetical protein POPTR_0017s00310g [Populus trichocarpa]
18 Hb_001047_200 0.1479673534 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
19 Hb_000256_020 0.1497716881 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
20 Hb_001754_040 0.1497754902 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]

Gene co-expression network

sample Hb_000809_180 Hb_000809_180 Hb_000823_030 Hb_000823_030 Hb_000809_180--Hb_000823_030 Hb_001953_120 Hb_001953_120 Hb_000809_180--Hb_001953_120 Hb_004236_010 Hb_004236_010 Hb_000809_180--Hb_004236_010 Hb_088144_020 Hb_088144_020 Hb_000809_180--Hb_088144_020 Hb_004032_040 Hb_004032_040 Hb_000809_180--Hb_004032_040 Hb_001006_340 Hb_001006_340 Hb_000809_180--Hb_001006_340 Hb_001047_200 Hb_001047_200 Hb_000823_030--Hb_001047_200 Hb_003142_040 Hb_003142_040 Hb_000823_030--Hb_003142_040 Hb_000823_030--Hb_088144_020 Hb_007426_060 Hb_007426_060 Hb_000823_030--Hb_007426_060 Hb_000184_150 Hb_000184_150 Hb_000823_030--Hb_000184_150 Hb_001171_030 Hb_001171_030 Hb_000823_030--Hb_001171_030 Hb_001953_120--Hb_003142_040 Hb_002968_070 Hb_002968_070 Hb_001953_120--Hb_002968_070 Hb_004223_160 Hb_004223_160 Hb_001953_120--Hb_004223_160 Hb_001953_120--Hb_088144_020 Hb_005832_010 Hb_005832_010 Hb_001953_120--Hb_005832_010 Hb_000934_210 Hb_000934_210 Hb_001953_120--Hb_000934_210 Hb_000645_130 Hb_000645_130 Hb_004236_010--Hb_000645_130 Hb_009302_030 Hb_009302_030 Hb_004236_010--Hb_009302_030 Hb_000500_300 Hb_000500_300 Hb_004236_010--Hb_000500_300 Hb_004659_090 Hb_004659_090 Hb_004236_010--Hb_004659_090 Hb_000189_630 Hb_000189_630 Hb_004236_010--Hb_000189_630 Hb_007283_030 Hb_007283_030 Hb_004236_010--Hb_007283_030 Hb_088144_020--Hb_003142_040 Hb_088144_020--Hb_002968_070 Hb_001221_180 Hb_001221_180 Hb_088144_020--Hb_001221_180 Hb_088144_020--Hb_001171_030 Hb_000703_200 Hb_000703_200 Hb_004032_040--Hb_000703_200 Hb_012368_100 Hb_012368_100 Hb_004032_040--Hb_012368_100 Hb_000094_320 Hb_000094_320 Hb_004032_040--Hb_000094_320 Hb_120470_010 Hb_120470_010 Hb_004032_040--Hb_120470_010 Hb_000117_070 Hb_000117_070 Hb_004032_040--Hb_000117_070 Hb_000574_420 Hb_000574_420 Hb_004032_040--Hb_000574_420 Hb_002005_080 Hb_002005_080 Hb_001006_340--Hb_002005_080 Hb_004411_030 Hb_004411_030 Hb_001006_340--Hb_004411_030 Hb_003060_060 Hb_003060_060 Hb_001006_340--Hb_003060_060 Hb_001431_120 Hb_001431_120 Hb_001006_340--Hb_001431_120 Hb_001754_040 Hb_001754_040 Hb_001006_340--Hb_001754_040 Hb_041327_010 Hb_041327_010 Hb_001006_340--Hb_041327_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.60197 3.59255 2.09808 1.21617 2.27236 0.989991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.587044 0.486153 1.46193 4.40444 1.98403

CAGE analysis