Hb_000661_040

Information

Type -
Description -
Location Contig661: 36389-43900
Sequence    

Annotation

kegg
ID pop:POPTR_0001s14300g
description POPTRDRAFT_814873; dehydratase family protein
nr
ID XP_012092653.1
description PREDICTED: dihydroxy-acid dehydratase, chloroplastic [Jatropha curcas]
swissprot
ID Q9LIR4
description Dihydroxy-acid dehydratase, chloroplastic OS=Arabidopsis thaliana GN=DHAD PE=2 SV=1
trembl
ID A0A067JC64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06414 PE=3 SV=1
Gene Ontology
ID GO:0005829
description dehydratase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52946: 36205-43701 , PASA_asmbl_52947: 41854-42108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000661_040 0.0 - - PREDICTED: dihydroxy-acid dehydratase, chloroplastic [Jatropha curcas]
2 Hb_000082_010 0.0883849088 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
3 Hb_003363_080 0.0919578511 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
4 Hb_028872_090 0.097056607 - - PREDICTED: urease [Jatropha curcas]
5 Hb_000077_320 0.0970595247 - - PREDICTED: lanC-like protein GCL2 [Jatropha curcas]
6 Hb_000329_800 0.1017285224 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008114_040 0.1043578348 - - Fanconi anemia group D2 [Gossypium arboreum]
8 Hb_000182_040 0.1046641469 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
9 Hb_002784_020 0.1056164974 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
10 Hb_003159_140 0.1063325363 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003177_020 0.1081275257 - - diphthine synthase, putative [Ricinus communis]
12 Hb_002445_100 0.1091364786 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
13 Hb_000402_150 0.1096878183 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
14 Hb_001878_050 0.1123239982 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
15 Hb_005765_010 0.1129008255 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Jatropha curcas]
16 Hb_000866_310 0.1163087714 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
17 Hb_000603_030 0.1166092493 - - Ribonuclease III, putative [Ricinus communis]
18 Hb_007380_060 0.1170144314 - - hypothetical protein POPTR_0006s00280g [Populus trichocarpa]
19 Hb_002374_010 0.1173054859 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
20 Hb_002471_240 0.1176707087 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000661_040 Hb_000661_040 Hb_000082_010 Hb_000082_010 Hb_000661_040--Hb_000082_010 Hb_003363_080 Hb_003363_080 Hb_000661_040--Hb_003363_080 Hb_028872_090 Hb_028872_090 Hb_000661_040--Hb_028872_090 Hb_000077_320 Hb_000077_320 Hb_000661_040--Hb_000077_320 Hb_000329_800 Hb_000329_800 Hb_000661_040--Hb_000329_800 Hb_008114_040 Hb_008114_040 Hb_000661_040--Hb_008114_040 Hb_016777_040 Hb_016777_040 Hb_000082_010--Hb_016777_040 Hb_002471_240 Hb_002471_240 Hb_000082_010--Hb_002471_240 Hb_000373_080 Hb_000373_080 Hb_000082_010--Hb_000373_080 Hb_006501_010 Hb_006501_010 Hb_000082_010--Hb_006501_010 Hb_028872_070 Hb_028872_070 Hb_000082_010--Hb_028872_070 Hb_000082_010--Hb_008114_040 Hb_007062_030 Hb_007062_030 Hb_003363_080--Hb_007062_030 Hb_000170_090 Hb_000170_090 Hb_003363_080--Hb_000170_090 Hb_005765_010 Hb_005765_010 Hb_003363_080--Hb_005765_010 Hb_001377_310 Hb_001377_310 Hb_003363_080--Hb_001377_310 Hb_003177_020 Hb_003177_020 Hb_003363_080--Hb_003177_020 Hb_000981_030 Hb_000981_030 Hb_003363_080--Hb_000981_030 Hb_000163_220 Hb_000163_220 Hb_028872_090--Hb_000163_220 Hb_002784_020 Hb_002784_020 Hb_028872_090--Hb_002784_020 Hb_000020_150 Hb_000020_150 Hb_028872_090--Hb_000020_150 Hb_063716_100 Hb_063716_100 Hb_028872_090--Hb_063716_100 Hb_000089_120 Hb_000089_120 Hb_028872_090--Hb_000089_120 Hb_003861_050 Hb_003861_050 Hb_028872_090--Hb_003861_050 Hb_002374_010 Hb_002374_010 Hb_000077_320--Hb_002374_010 Hb_000077_320--Hb_002784_020 Hb_004994_010 Hb_004994_010 Hb_000077_320--Hb_004994_010 Hb_002445_100 Hb_002445_100 Hb_000077_320--Hb_002445_100 Hb_000617_230 Hb_000617_230 Hb_000077_320--Hb_000617_230 Hb_005779_010 Hb_005779_010 Hb_000077_320--Hb_005779_010 Hb_004319_080 Hb_004319_080 Hb_000329_800--Hb_004319_080 Hb_000035_470 Hb_000035_470 Hb_000329_800--Hb_000035_470 Hb_001301_150 Hb_001301_150 Hb_000329_800--Hb_001301_150 Hb_004846_220 Hb_004846_220 Hb_000329_800--Hb_004846_220 Hb_003159_140 Hb_003159_140 Hb_000329_800--Hb_003159_140 Hb_005000_170 Hb_005000_170 Hb_000329_800--Hb_005000_170 Hb_000402_150 Hb_000402_150 Hb_008114_040--Hb_000402_150 Hb_000189_600 Hb_000189_600 Hb_008114_040--Hb_000189_600 Hb_004333_040 Hb_004333_040 Hb_008114_040--Hb_004333_040 Hb_006588_060 Hb_006588_060 Hb_008114_040--Hb_006588_060 Hb_002400_340 Hb_002400_340 Hb_008114_040--Hb_002400_340 Hb_008114_040--Hb_000617_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1027 30.6822 46.7517 25.1043 19.8772 51.3125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.2125 26.5769 24.1274 55.3945 22.7492

CAGE analysis