Hb_098256_010

Information

Type -
Description -
Location Contig98256: 15-663
Sequence    

Annotation

kegg
ID tcc:TCM_044877
description DNA/RNA polymerases superfamily protein, putative
nr
ID XP_012487865.1
description PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
swissprot
ID P20825
description Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061FQY7
description DNA/RNA polymerases superfamily protein, putative OS=Theobroma cacao GN=TCM_044877 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098256_010 0.0 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
2 Hb_002968_030 0.1635114281 - - Pectinesterase-1 precursor, putative [Ricinus communis]
3 Hb_012239_010 0.1983302886 - - -
4 Hb_001584_380 0.2001947237 - - PREDICTED: tropomyosin-like [Jatropha curcas]
5 Hb_007163_040 0.2155600431 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
6 Hb_003517_100 0.2158469909 transcription factor TF Family: GRAS -
7 Hb_001268_300 0.2188800889 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000997_340 0.2210295293 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
9 Hb_001391_100 0.2226574668 - - AMP dependent ligase, putative [Ricinus communis]
10 Hb_001410_010 0.2258595433 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
11 Hb_042202_020 0.2259808918 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
12 Hb_000811_010 0.2262189375 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF118 [Jatropha curcas]
13 Hb_005467_010 0.2264926627 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
14 Hb_019654_110 0.2276564288 - - PREDICTED: F-box protein SKIP23-like [Jatropha curcas]
15 Hb_002003_040 0.2280480994 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
16 Hb_000261_320 0.2288716742 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
17 Hb_000418_030 0.2295854798 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
18 Hb_005288_210 0.2303974303 - - hypothetical protein VITISV_017217 [Vitis vinifera]
19 Hb_001366_130 0.2306892288 - - unnamed protein product [Coffea canephora]
20 Hb_004007_200 0.2313611926 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]

Gene co-expression network

sample Hb_098256_010 Hb_098256_010 Hb_002968_030 Hb_002968_030 Hb_098256_010--Hb_002968_030 Hb_012239_010 Hb_012239_010 Hb_098256_010--Hb_012239_010 Hb_001584_380 Hb_001584_380 Hb_098256_010--Hb_001584_380 Hb_007163_040 Hb_007163_040 Hb_098256_010--Hb_007163_040 Hb_003517_100 Hb_003517_100 Hb_098256_010--Hb_003517_100 Hb_001268_300 Hb_001268_300 Hb_098256_010--Hb_001268_300 Hb_132840_030 Hb_132840_030 Hb_002968_030--Hb_132840_030 Hb_000416_060 Hb_000416_060 Hb_002968_030--Hb_000416_060 Hb_000800_010 Hb_000800_010 Hb_002968_030--Hb_000800_010 Hb_003687_010 Hb_003687_010 Hb_002968_030--Hb_003687_010 Hb_005588_120 Hb_005588_120 Hb_002968_030--Hb_005588_120 Hb_000375_060 Hb_000375_060 Hb_002968_030--Hb_000375_060 Hb_007425_020 Hb_007425_020 Hb_012239_010--Hb_007425_020 Hb_012239_010--Hb_001584_380 Hb_012239_050 Hb_012239_050 Hb_012239_010--Hb_012239_050 Hb_012239_010--Hb_002968_030 Hb_003910_050 Hb_003910_050 Hb_012239_010--Hb_003910_050 Hb_001159_020 Hb_001159_020 Hb_001584_380--Hb_001159_020 Hb_000256_160 Hb_000256_160 Hb_001584_380--Hb_000256_160 Hb_004096_220 Hb_004096_220 Hb_001584_380--Hb_004096_220 Hb_003417_030 Hb_003417_030 Hb_001584_380--Hb_003417_030 Hb_000094_150 Hb_000094_150 Hb_001584_380--Hb_000094_150 Hb_000261_310 Hb_000261_310 Hb_001584_380--Hb_000261_310 Hb_006938_040 Hb_006938_040 Hb_007163_040--Hb_006938_040 Hb_002027_170 Hb_002027_170 Hb_007163_040--Hb_002027_170 Hb_000540_040 Hb_000540_040 Hb_007163_040--Hb_000540_040 Hb_002571_070 Hb_002571_070 Hb_007163_040--Hb_002571_070 Hb_004126_030 Hb_004126_030 Hb_007163_040--Hb_004126_030 Hb_001439_250 Hb_001439_250 Hb_007163_040--Hb_001439_250 Hb_003517_100--Hb_001268_300 Hb_000522_010 Hb_000522_010 Hb_003517_100--Hb_000522_010 Hb_002888_040 Hb_002888_040 Hb_003517_100--Hb_002888_040 Hb_000365_220 Hb_000365_220 Hb_003517_100--Hb_000365_220 Hb_000417_410 Hb_000417_410 Hb_003517_100--Hb_000417_410 Hb_008494_090 Hb_008494_090 Hb_003517_100--Hb_008494_090 Hb_000417_280 Hb_000417_280 Hb_001268_300--Hb_000417_280 Hb_042202_020 Hb_042202_020 Hb_001268_300--Hb_042202_020 Hb_009193_060 Hb_009193_060 Hb_001268_300--Hb_009193_060 Hb_082683_010 Hb_082683_010 Hb_001268_300--Hb_082683_010 Hb_073973_020 Hb_073973_020 Hb_001268_300--Hb_073973_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0447878 0.487743 0.136521 0.320257 0 0.0679622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.163576 0 0.369406 0.315516

CAGE analysis