Hb_001584_380

Information

Type -
Description -
Location Contig1584: 234419-241613
Sequence    

Annotation

kegg
ID rcu:RCOM_1436610
description hypothetical protein
nr
ID XP_012088834.1
description PREDICTED: tropomyosin-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23173 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14018: 234426-235001 , PASA_asmbl_14021: 238168-239069 , PASA_asmbl_14022: 237912-239052
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001584_380 0.0 - - PREDICTED: tropomyosin-like [Jatropha curcas]
2 Hb_001159_020 0.1637321887 - - -
3 Hb_000256_160 0.1756019443 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]
4 Hb_004096_220 0.1756410048 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
5 Hb_003417_030 0.1850124964 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
6 Hb_000094_150 0.1852174261 - - -
7 Hb_000261_310 0.1854339616 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
8 Hb_083078_010 0.1859680098 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
9 Hb_003910_050 0.1864158658 - - PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]
10 Hb_002010_090 0.1873425339 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
11 Hb_006816_010 0.1899469649 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001268_300 0.190820281 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012033_010 0.1978675546 - - PREDICTED: histone H1.2-like [Jatropha curcas]
14 Hb_003549_050 0.1980418418 - - PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Jatropha curcas]
15 Hb_098256_010 0.2001947237 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
16 Hb_000260_160 0.2008855986 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
17 Hb_002968_030 0.2021802606 - - Pectinesterase-1 precursor, putative [Ricinus communis]
18 Hb_004162_220 0.2030275685 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
19 Hb_005288_050 0.2039448165 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR4 [Jatropha curcas]
20 Hb_017914_010 0.2045364855 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001584_380 Hb_001584_380 Hb_001159_020 Hb_001159_020 Hb_001584_380--Hb_001159_020 Hb_000256_160 Hb_000256_160 Hb_001584_380--Hb_000256_160 Hb_004096_220 Hb_004096_220 Hb_001584_380--Hb_004096_220 Hb_003417_030 Hb_003417_030 Hb_001584_380--Hb_003417_030 Hb_000094_150 Hb_000094_150 Hb_001584_380--Hb_000094_150 Hb_000261_310 Hb_000261_310 Hb_001584_380--Hb_000261_310 Hb_006916_110 Hb_006916_110 Hb_001159_020--Hb_006916_110 Hb_000271_120 Hb_000271_120 Hb_001159_020--Hb_000271_120 Hb_012325_010 Hb_012325_010 Hb_001159_020--Hb_012325_010 Hb_000227_330 Hb_000227_330 Hb_001159_020--Hb_000227_330 Hb_000220_120 Hb_000220_120 Hb_001159_020--Hb_000220_120 Hb_000787_200 Hb_000787_200 Hb_001159_020--Hb_000787_200 Hb_001235_130 Hb_001235_130 Hb_000256_160--Hb_001235_130 Hb_003226_090 Hb_003226_090 Hb_000256_160--Hb_003226_090 Hb_000256_160--Hb_000094_150 Hb_004129_010 Hb_004129_010 Hb_000256_160--Hb_004129_010 Hb_005588_120 Hb_005588_120 Hb_000256_160--Hb_005588_120 Hb_002010_090 Hb_002010_090 Hb_000256_160--Hb_002010_090 Hb_012033_010 Hb_012033_010 Hb_004096_220--Hb_012033_010 Hb_001307_200 Hb_001307_200 Hb_004096_220--Hb_001307_200 Hb_004096_220--Hb_000261_310 Hb_083078_010 Hb_083078_010 Hb_004096_220--Hb_083078_010 Hb_000438_010 Hb_000438_010 Hb_004096_220--Hb_000438_010 Hb_001268_300 Hb_001268_300 Hb_004096_220--Hb_001268_300 Hb_017914_010 Hb_017914_010 Hb_003417_030--Hb_017914_010 Hb_024714_070 Hb_024714_070 Hb_003417_030--Hb_024714_070 Hb_003725_010 Hb_003725_010 Hb_003417_030--Hb_003725_010 Hb_012799_150 Hb_012799_150 Hb_003417_030--Hb_012799_150 Hb_003428_090 Hb_003428_090 Hb_003417_030--Hb_003428_090 Hb_121089_020 Hb_121089_020 Hb_003417_030--Hb_121089_020 Hb_000094_150--Hb_002010_090 Hb_001059_060 Hb_001059_060 Hb_000094_150--Hb_001059_060 Hb_000094_150--Hb_000261_310 Hb_001404_090 Hb_001404_090 Hb_000094_150--Hb_001404_090 Hb_000248_100 Hb_000248_100 Hb_000094_150--Hb_000248_100 Hb_000261_310--Hb_000256_160 Hb_000309_030 Hb_000309_030 Hb_000261_310--Hb_000309_030 Hb_000116_240 Hb_000116_240 Hb_000261_310--Hb_000116_240 Hb_007575_030 Hb_007575_030 Hb_000261_310--Hb_007575_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.59504 6.55218 5.82679 4.31129 1.21196 1.37154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0734051 3.67711 0.0728662 7.13592 7.30719

CAGE analysis