Hb_001159_020

Information

Type -
Description -
Location Contig1159: 9449-11507
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0031625
description cullin-1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04763: 8665-10867
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001159_020 0.0 - - -
2 Hb_006916_110 0.098007899 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
3 Hb_000271_120 0.1033803982 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
4 Hb_012325_010 0.1093106664 - - hypothetical protein RCOM_0068670 [Ricinus communis]
5 Hb_000227_330 0.1123192018 - - Acyl-CoA synthetase [Ricinus communis]
6 Hb_000220_120 0.1125864198 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
7 Hb_000787_200 0.1138683347 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_011674_040 0.1157546975 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
9 Hb_001564_070 0.1195507089 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
10 Hb_000205_250 0.122337862 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
11 Hb_003417_030 0.1229840712 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
12 Hb_010872_050 0.1234009779 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
13 Hb_143629_020 0.1236960778 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
14 Hb_001507_050 0.1245186902 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_004586_090 0.1250485503 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
16 Hb_000007_410 0.1259438102 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
17 Hb_000125_180 0.1265038912 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
18 Hb_000960_080 0.1282879364 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
19 Hb_003725_010 0.1298376911 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
20 Hb_000256_160 0.130581743 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]

Gene co-expression network

sample Hb_001159_020 Hb_001159_020 Hb_006916_110 Hb_006916_110 Hb_001159_020--Hb_006916_110 Hb_000271_120 Hb_000271_120 Hb_001159_020--Hb_000271_120 Hb_012325_010 Hb_012325_010 Hb_001159_020--Hb_012325_010 Hb_000227_330 Hb_000227_330 Hb_001159_020--Hb_000227_330 Hb_000220_120 Hb_000220_120 Hb_001159_020--Hb_000220_120 Hb_000787_200 Hb_000787_200 Hb_001159_020--Hb_000787_200 Hb_006916_110--Hb_012325_010 Hb_042474_010 Hb_042474_010 Hb_006916_110--Hb_042474_010 Hb_021576_010 Hb_021576_010 Hb_006916_110--Hb_021576_010 Hb_000342_050 Hb_000342_050 Hb_006916_110--Hb_000342_050 Hb_000209_100 Hb_000209_100 Hb_006916_110--Hb_000209_100 Hb_000190_090 Hb_000190_090 Hb_006916_110--Hb_000190_090 Hb_011925_020 Hb_011925_020 Hb_000271_120--Hb_011925_020 Hb_000205_250 Hb_000205_250 Hb_000271_120--Hb_000205_250 Hb_000007_410 Hb_000007_410 Hb_000271_120--Hb_000007_410 Hb_000049_250 Hb_000049_250 Hb_000271_120--Hb_000049_250 Hb_000271_120--Hb_000220_120 Hb_001006_010 Hb_001006_010 Hb_000271_120--Hb_001006_010 Hb_012325_010--Hb_000227_330 Hb_012325_010--Hb_000342_050 Hb_000125_180 Hb_000125_180 Hb_012325_010--Hb_000125_180 Hb_000157_070 Hb_000157_070 Hb_012325_010--Hb_000157_070 Hb_020805_180 Hb_020805_180 Hb_012325_010--Hb_020805_180 Hb_053575_020 Hb_053575_020 Hb_000227_330--Hb_053575_020 Hb_000227_330--Hb_000125_180 Hb_000317_350 Hb_000317_350 Hb_000227_330--Hb_000317_350 Hb_000227_330--Hb_000205_250 Hb_000227_330--Hb_000271_120 Hb_000200_110 Hb_000200_110 Hb_000220_120--Hb_000200_110 Hb_000220_120--Hb_000049_250 Hb_000220_120--Hb_000787_200 Hb_001477_020 Hb_001477_020 Hb_000220_120--Hb_001477_020 Hb_000428_030 Hb_000428_030 Hb_000220_120--Hb_000428_030 Hb_000318_150 Hb_000318_150 Hb_000220_120--Hb_000318_150 Hb_000787_200--Hb_000318_150 Hb_011674_040 Hb_011674_040 Hb_000787_200--Hb_011674_040 Hb_000834_230 Hb_000834_230 Hb_000787_200--Hb_000834_230 Hb_080147_050 Hb_080147_050 Hb_000787_200--Hb_080147_050 Hb_000787_200--Hb_000342_050 Hb_000270_170 Hb_000270_170 Hb_000787_200--Hb_000270_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0926686 0.462646 0.405689 0.30167 0.088986 0.120224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0711443 0.22375 0.100807 0.634857 0.447325

CAGE analysis