Hb_006938_040

Information

Type -
Description -
Location Contig6938: 43698-45731
Sequence    

Annotation

kegg
ID pop:POPTR_0017s03000g
description hypothetical protein
nr
ID XP_011001505.1
description PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
swissprot
ID Q6NLC8
description Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1
trembl
ID U5FHD2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03000g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006938_040 0.0 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
2 Hb_007163_040 0.1380309123 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
3 Hb_004449_250 0.1615610573 - - PREDICTED: protein EI24 homolog [Jatropha curcas]
4 Hb_000056_080 0.1656244156 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
5 Hb_002027_170 0.1674627937 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
6 Hb_000473_120 0.169035784 - - hypothetical protein JCGZ_16177 [Jatropha curcas]
7 Hb_000928_120 0.1699778449 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
8 Hb_000028_430 0.1700157411 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
9 Hb_005054_020 0.1715318054 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
10 Hb_003001_130 0.1718783979 - - conserved hypothetical protein [Ricinus communis]
11 Hb_019654_110 0.1741658924 - - PREDICTED: F-box protein SKIP23-like [Jatropha curcas]
12 Hb_000300_230 0.1772686813 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
13 Hb_001054_090 0.1777190795 - - Potassium channel SKOR, putative [Ricinus communis]
14 Hb_000200_170 0.1790073899 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
15 Hb_002849_070 0.1810728304 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
16 Hb_000622_330 0.183860735 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
17 Hb_005489_150 0.1842073256 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
18 Hb_000797_060 0.1847653453 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
19 Hb_002325_060 0.1849130086 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
20 Hb_002289_150 0.1862497787 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]

Gene co-expression network

sample Hb_006938_040 Hb_006938_040 Hb_007163_040 Hb_007163_040 Hb_006938_040--Hb_007163_040 Hb_004449_250 Hb_004449_250 Hb_006938_040--Hb_004449_250 Hb_000056_080 Hb_000056_080 Hb_006938_040--Hb_000056_080 Hb_002027_170 Hb_002027_170 Hb_006938_040--Hb_002027_170 Hb_000473_120 Hb_000473_120 Hb_006938_040--Hb_000473_120 Hb_000928_120 Hb_000928_120 Hb_006938_040--Hb_000928_120 Hb_007163_040--Hb_002027_170 Hb_000540_040 Hb_000540_040 Hb_007163_040--Hb_000540_040 Hb_002571_070 Hb_002571_070 Hb_007163_040--Hb_002571_070 Hb_004126_030 Hb_004126_030 Hb_007163_040--Hb_004126_030 Hb_001439_250 Hb_001439_250 Hb_007163_040--Hb_001439_250 Hb_000320_350 Hb_000320_350 Hb_004449_250--Hb_000320_350 Hb_011360_110 Hb_011360_110 Hb_004449_250--Hb_011360_110 Hb_012707_040 Hb_012707_040 Hb_004449_250--Hb_012707_040 Hb_003006_080 Hb_003006_080 Hb_004449_250--Hb_003006_080 Hb_000258_050 Hb_000258_050 Hb_004449_250--Hb_000258_050 Hb_007537_030 Hb_007537_030 Hb_004449_250--Hb_007537_030 Hb_002849_070 Hb_002849_070 Hb_000056_080--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_000056_080--Hb_000200_170 Hb_000203_270 Hb_000203_270 Hb_000056_080--Hb_000203_270 Hb_003670_030 Hb_003670_030 Hb_000056_080--Hb_003670_030 Hb_000735_140 Hb_000735_140 Hb_000056_080--Hb_000735_140 Hb_003849_190 Hb_003849_190 Hb_000056_080--Hb_003849_190 Hb_001049_160 Hb_001049_160 Hb_002027_170--Hb_001049_160 Hb_005054_170 Hb_005054_170 Hb_002027_170--Hb_005054_170 Hb_000056_280 Hb_000056_280 Hb_002027_170--Hb_000056_280 Hb_001318_140 Hb_001318_140 Hb_002027_170--Hb_001318_140 Hb_065525_010 Hb_065525_010 Hb_002027_170--Hb_065525_010 Hb_000836_600 Hb_000836_600 Hb_002027_170--Hb_000836_600 Hb_031089_050 Hb_031089_050 Hb_000473_120--Hb_031089_050 Hb_011828_010 Hb_011828_010 Hb_000473_120--Hb_011828_010 Hb_001998_220 Hb_001998_220 Hb_000473_120--Hb_001998_220 Hb_020805_120 Hb_020805_120 Hb_000473_120--Hb_020805_120 Hb_000473_120--Hb_003006_080 Hb_002311_130 Hb_002311_130 Hb_000473_120--Hb_002311_130 Hb_004522_030 Hb_004522_030 Hb_000928_120--Hb_004522_030 Hb_000283_140 Hb_000283_140 Hb_000928_120--Hb_000283_140 Hb_003001_130 Hb_003001_130 Hb_000928_120--Hb_003001_130 Hb_000622_330 Hb_000622_330 Hb_000928_120--Hb_000622_330 Hb_000570_020 Hb_000570_020 Hb_000928_120--Hb_000570_020 Hb_000928_120--Hb_007537_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.154917 6.45265 2.7905 11.102 1.00263 1.45468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.247003 2.42794 0.795217 3.19663 4.31655

CAGE analysis