Hb_001439_250

Information

Type transcription factor
Description TF Family: NAC
Location Contig1439: 220717-222101
Sequence    

Annotation

kegg
ID cic:CICLE_v10012093mg
description hypothetical protein
nr
ID XP_012084730.1
description PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
swissprot
ID Q9FLJ2
description NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1
trembl
ID R4N5I4
description NAC transcription factor 001 OS=Jatropha curcas GN=JCGZ_19869 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac domain-containing protein 100-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11615: 220796-221249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_250 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
2 Hb_000028_580 0.1605630531 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
3 Hb_000320_350 0.1790432243 - - hypothetical protein RCOM_0904330 [Ricinus communis]
4 Hb_000740_090 0.1791539792 - - conserved hypothetical protein [Ricinus communis]
5 Hb_160405_010 0.1803556648 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
6 Hb_001178_080 0.1876444417 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
7 Hb_004449_250 0.1876693774 - - PREDICTED: protein EI24 homolog [Jatropha curcas]
8 Hb_017159_010 0.1877763959 - - -
9 Hb_001221_290 0.188618634 - - hypothetical protein RCOM_1506010 [Ricinus communis]
10 Hb_004449_090 0.1957048573 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
11 Hb_007163_040 0.1960240406 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
12 Hb_028001_020 0.1963030029 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
13 Hb_001178_090 0.1976950626 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
14 Hb_003001_130 0.1985259274 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001053_210 0.1994502092 - - -
16 Hb_001054_090 0.1999901078 - - Potassium channel SKOR, putative [Ricinus communis]
17 Hb_000032_430 0.2007070884 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000424_030 0.2025666542 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000056_080 0.2060200637 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
20 Hb_000603_020 0.2060434585 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001439_250 Hb_001439_250 Hb_000028_580 Hb_000028_580 Hb_001439_250--Hb_000028_580 Hb_000320_350 Hb_000320_350 Hb_001439_250--Hb_000320_350 Hb_000740_090 Hb_000740_090 Hb_001439_250--Hb_000740_090 Hb_160405_010 Hb_160405_010 Hb_001439_250--Hb_160405_010 Hb_001178_080 Hb_001178_080 Hb_001439_250--Hb_001178_080 Hb_004449_250 Hb_004449_250 Hb_001439_250--Hb_004449_250 Hb_000028_550 Hb_000028_550 Hb_000028_580--Hb_000028_550 Hb_002097_080 Hb_002097_080 Hb_000028_580--Hb_002097_080 Hb_004449_090 Hb_004449_090 Hb_000028_580--Hb_004449_090 Hb_000479_060 Hb_000479_060 Hb_000028_580--Hb_000479_060 Hb_154038_040 Hb_154038_040 Hb_000028_580--Hb_154038_040 Hb_135720_010 Hb_135720_010 Hb_000028_580--Hb_135720_010 Hb_000603_020 Hb_000603_020 Hb_000320_350--Hb_000603_020 Hb_000320_350--Hb_004449_250 Hb_011360_110 Hb_011360_110 Hb_000320_350--Hb_011360_110 Hb_003001_130 Hb_003001_130 Hb_000320_350--Hb_003001_130 Hb_028639_030 Hb_028639_030 Hb_000320_350--Hb_028639_030 Hb_000928_120 Hb_000928_120 Hb_000320_350--Hb_000928_120 Hb_001053_210 Hb_001053_210 Hb_000740_090--Hb_001053_210 Hb_003430_080 Hb_003430_080 Hb_000740_090--Hb_003430_080 Hb_147245_010 Hb_147245_010 Hb_000740_090--Hb_147245_010 Hb_001545_130 Hb_001545_130 Hb_000740_090--Hb_001545_130 Hb_000940_210 Hb_000940_210 Hb_000740_090--Hb_000940_210 Hb_034507_060 Hb_034507_060 Hb_000740_090--Hb_034507_060 Hb_160405_010--Hb_004449_090 Hb_000032_430 Hb_000032_430 Hb_160405_010--Hb_000032_430 Hb_005016_020 Hb_005016_020 Hb_160405_010--Hb_005016_020 Hb_000000_110 Hb_000000_110 Hb_160405_010--Hb_000000_110 Hb_001357_030 Hb_001357_030 Hb_160405_010--Hb_001357_030 Hb_160405_010--Hb_001178_080 Hb_001178_080--Hb_005016_020 Hb_012727_010 Hb_012727_010 Hb_001178_080--Hb_012727_010 Hb_001178_080--Hb_000000_110 Hb_001596_020 Hb_001596_020 Hb_001178_080--Hb_001596_020 Hb_006949_060 Hb_006949_060 Hb_001178_080--Hb_006949_060 Hb_017159_010 Hb_017159_010 Hb_001178_080--Hb_017159_010 Hb_004449_250--Hb_011360_110 Hb_012707_040 Hb_012707_040 Hb_004449_250--Hb_012707_040 Hb_003006_080 Hb_003006_080 Hb_004449_250--Hb_003006_080 Hb_000258_050 Hb_000258_050 Hb_004449_250--Hb_000258_050 Hb_007537_030 Hb_007537_030 Hb_004449_250--Hb_007537_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.58081 2.36166 0.970657 5.45288 0.0519268 0.527057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.422119 0.597667 0 1.49066 1.50892

CAGE analysis