Hb_007163_040

Information

Type -
Description -
Location Contig7163: 72264-73230
Sequence    

Annotation

kegg
ID vvi:100854522
description uncharacterized protein At5g65660
nr
ID XP_003632481.1
description PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
swissprot
ID Q9LSK9
description Uncharacterized protein At5g65660 OS=Arabidopsis thaliana GN=At5g65660 PE=2 SV=1
trembl
ID D7SSI8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0205g00010 PE=4 SV=1
Gene Ontology
ID GO:0005886
description hydroxyproline-rich glycoprotein family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55454: 72602-73130
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007163_040 0.0 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
2 Hb_006938_040 0.1380309123 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
3 Hb_002027_170 0.1638369685 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
4 Hb_000540_040 0.184896051 - - PREDICTED: chitinase 2 [Amborella trichopoda]
5 Hb_002571_070 0.1877115412 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
6 Hb_004126_030 0.1929023777 - - kinase, putative [Ricinus communis]
7 Hb_001439_250 0.1960240406 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
8 Hb_001976_020 0.1965513087 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000997_340 0.1976991671 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
10 Hb_000979_160 0.1981351401 - - hypothetical protein RCOM_0629030 [Ricinus communis]
11 Hb_002968_030 0.1981513174 - - Pectinesterase-1 precursor, putative [Ricinus communis]
12 Hb_002119_070 0.200391346 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
13 Hb_064047_010 0.2022798907 - - conserved hypothetical protein [Ricinus communis]
14 Hb_176894_010 0.2025503605 - - -
15 Hb_002324_040 0.2040731053 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
16 Hb_000028_580 0.2042584481 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
17 Hb_009615_100 0.2046906932 - - hypothetical protein JCGZ_24459 [Jatropha curcas]
18 Hb_000056_350 0.204973823 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
19 Hb_000016_150 0.2054786773 - - PREDICTED: uncharacterized protein LOC105137629 [Populus euphratica]
20 Hb_001178_080 0.205573005 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]

Gene co-expression network

sample Hb_007163_040 Hb_007163_040 Hb_006938_040 Hb_006938_040 Hb_007163_040--Hb_006938_040 Hb_002027_170 Hb_002027_170 Hb_007163_040--Hb_002027_170 Hb_000540_040 Hb_000540_040 Hb_007163_040--Hb_000540_040 Hb_002571_070 Hb_002571_070 Hb_007163_040--Hb_002571_070 Hb_004126_030 Hb_004126_030 Hb_007163_040--Hb_004126_030 Hb_001439_250 Hb_001439_250 Hb_007163_040--Hb_001439_250 Hb_004449_250 Hb_004449_250 Hb_006938_040--Hb_004449_250 Hb_000056_080 Hb_000056_080 Hb_006938_040--Hb_000056_080 Hb_006938_040--Hb_002027_170 Hb_000473_120 Hb_000473_120 Hb_006938_040--Hb_000473_120 Hb_000928_120 Hb_000928_120 Hb_006938_040--Hb_000928_120 Hb_001049_160 Hb_001049_160 Hb_002027_170--Hb_001049_160 Hb_005054_170 Hb_005054_170 Hb_002027_170--Hb_005054_170 Hb_000056_280 Hb_000056_280 Hb_002027_170--Hb_000056_280 Hb_001318_140 Hb_001318_140 Hb_002027_170--Hb_001318_140 Hb_065525_010 Hb_065525_010 Hb_002027_170--Hb_065525_010 Hb_000836_600 Hb_000836_600 Hb_002027_170--Hb_000836_600 Hb_000020_030 Hb_000020_030 Hb_000540_040--Hb_000020_030 Hb_000181_210 Hb_000181_210 Hb_000540_040--Hb_000181_210 Hb_025432_010 Hb_025432_010 Hb_000540_040--Hb_025432_010 Hb_026549_050 Hb_026549_050 Hb_000540_040--Hb_026549_050 Hb_002324_040 Hb_002324_040 Hb_000540_040--Hb_002324_040 Hb_012727_010 Hb_012727_010 Hb_000540_040--Hb_012727_010 Hb_000056_350 Hb_000056_350 Hb_002571_070--Hb_000056_350 Hb_002571_070--Hb_001049_160 Hb_013405_100 Hb_013405_100 Hb_002571_070--Hb_013405_100 Hb_000477_010 Hb_000477_010 Hb_002571_070--Hb_000477_010 Hb_000521_100 Hb_000521_100 Hb_002571_070--Hb_000521_100 Hb_002431_090 Hb_002431_090 Hb_002571_070--Hb_002431_090 Hb_000847_010 Hb_000847_010 Hb_004126_030--Hb_000847_010 Hb_000800_010 Hb_000800_010 Hb_004126_030--Hb_000800_010 Hb_004126_030--Hb_002027_170 Hb_002973_030 Hb_002973_030 Hb_004126_030--Hb_002973_030 Hb_000979_160 Hb_000979_160 Hb_004126_030--Hb_000979_160 Hb_019654_110 Hb_019654_110 Hb_004126_030--Hb_019654_110 Hb_000028_580 Hb_000028_580 Hb_001439_250--Hb_000028_580 Hb_000320_350 Hb_000320_350 Hb_001439_250--Hb_000320_350 Hb_000740_090 Hb_000740_090 Hb_001439_250--Hb_000740_090 Hb_160405_010 Hb_160405_010 Hb_001439_250--Hb_160405_010 Hb_001178_080 Hb_001178_080 Hb_001439_250--Hb_001178_080 Hb_001439_250--Hb_004449_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.423785 30.4069 6.06877 39.4373 1.0284 3.92634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.358534 7.61258 0.685453 15.5691 12.3695

CAGE analysis