Hb_012239_010

Information

Type -
Description -
Location Contig12239: 8820-9777
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012239_010 0.0 - - -
2 Hb_098256_010 0.1983302886 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
3 Hb_007425_020 0.2140204598 transcription factor TF Family: ERF PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Jatropha curcas]
4 Hb_001584_380 0.2291335501 - - PREDICTED: tropomyosin-like [Jatropha curcas]
5 Hb_012239_050 0.2504586813 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002968_030 0.26441063 - - Pectinesterase-1 precursor, putative [Ricinus communis]
7 Hb_003910_050 0.2855949009 - - PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]
8 Hb_164114_010 0.2867891343 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
9 Hb_002076_030 0.2870914815 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
10 Hb_007163_040 0.2886297774 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
11 Hb_005467_010 0.2904283863 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
12 Hb_177019_010 0.2942744997 - - Uncharacterized protein TCM_004012 [Theobroma cacao]
13 Hb_001722_060 0.2946695739 - - -
14 Hb_000386_050 0.2956399492 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Jatropha curcas]
15 Hb_003274_030 0.296734807 - - putative wall-associated kinase family protein [Populus trichocarpa]
16 Hb_033642_050 0.2975619337 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 4-like [Jatropha curcas]
17 Hb_012132_020 0.2980463118 - - glutamine synthetase [Hevea brasiliensis]
18 Hb_002999_140 0.298713306 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
19 Hb_000092_120 0.2987617919 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Populus euphratica]
20 Hb_004007_200 0.2994668978 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]

Gene co-expression network

sample Hb_012239_010 Hb_012239_010 Hb_098256_010 Hb_098256_010 Hb_012239_010--Hb_098256_010 Hb_007425_020 Hb_007425_020 Hb_012239_010--Hb_007425_020 Hb_001584_380 Hb_001584_380 Hb_012239_010--Hb_001584_380 Hb_012239_050 Hb_012239_050 Hb_012239_010--Hb_012239_050 Hb_002968_030 Hb_002968_030 Hb_012239_010--Hb_002968_030 Hb_003910_050 Hb_003910_050 Hb_012239_010--Hb_003910_050 Hb_098256_010--Hb_002968_030 Hb_098256_010--Hb_001584_380 Hb_007163_040 Hb_007163_040 Hb_098256_010--Hb_007163_040 Hb_003517_100 Hb_003517_100 Hb_098256_010--Hb_003517_100 Hb_001268_300 Hb_001268_300 Hb_098256_010--Hb_001268_300 Hb_000092_120 Hb_000092_120 Hb_007425_020--Hb_000092_120 Hb_000320_020 Hb_000320_020 Hb_007425_020--Hb_000320_020 Hb_000386_050 Hb_000386_050 Hb_007425_020--Hb_000386_050 Hb_002660_120 Hb_002660_120 Hb_007425_020--Hb_002660_120 Hb_011618_100 Hb_011618_100 Hb_007425_020--Hb_011618_100 Hb_001159_020 Hb_001159_020 Hb_001584_380--Hb_001159_020 Hb_000256_160 Hb_000256_160 Hb_001584_380--Hb_000256_160 Hb_004096_220 Hb_004096_220 Hb_001584_380--Hb_004096_220 Hb_003417_030 Hb_003417_030 Hb_001584_380--Hb_003417_030 Hb_000094_150 Hb_000094_150 Hb_001584_380--Hb_000094_150 Hb_000261_310 Hb_000261_310 Hb_001584_380--Hb_000261_310 Hb_004648_110 Hb_004648_110 Hb_012239_050--Hb_004648_110 Hb_010691_010 Hb_010691_010 Hb_012239_050--Hb_010691_010 Hb_012132_020 Hb_012132_020 Hb_012239_050--Hb_012132_020 Hb_001098_030 Hb_001098_030 Hb_012239_050--Hb_001098_030 Hb_000679_030 Hb_000679_030 Hb_012239_050--Hb_000679_030 Hb_002603_110 Hb_002603_110 Hb_012239_050--Hb_002603_110 Hb_132840_030 Hb_132840_030 Hb_002968_030--Hb_132840_030 Hb_000416_060 Hb_000416_060 Hb_002968_030--Hb_000416_060 Hb_000800_010 Hb_000800_010 Hb_002968_030--Hb_000800_010 Hb_003687_010 Hb_003687_010 Hb_002968_030--Hb_003687_010 Hb_005588_120 Hb_005588_120 Hb_002968_030--Hb_005588_120 Hb_000375_060 Hb_000375_060 Hb_002968_030--Hb_000375_060 Hb_001105_100 Hb_001105_100 Hb_003910_050--Hb_001105_100 Hb_029695_120 Hb_029695_120 Hb_003910_050--Hb_029695_120 Hb_004162_220 Hb_004162_220 Hb_003910_050--Hb_004162_220 Hb_001511_090 Hb_001511_090 Hb_003910_050--Hb_001511_090 Hb_000617_250 Hb_000617_250 Hb_003910_050--Hb_000617_250 Hb_005695_080 Hb_005695_080 Hb_003910_050--Hb_005695_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.395932 0.177122 0.276233 0 0.101984
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.413446 0 0.275295 0.344659

CAGE analysis