Hb_000320_020

Information

Type transcription factor
Description TF Family: WRKY
Location Contig320: 32827-35339
Sequence    

Annotation

kegg
ID rcu:RCOM_0903720
description WRKY transcription factor, putative
nr
ID XP_012091314.1
description PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
swissprot
ID Q9C519
description WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1
trembl
ID S5CKG1
description WRKY transcription factor 31 OS=Jatropha curcas GN=WRKY31 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33783: 32762-35110
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_020 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
2 Hb_000005_340 0.1642517884 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
3 Hb_000009_150 0.1653692353 - - carbohydrate transporter, putative [Ricinus communis]
4 Hb_001433_160 0.1778996499 - - phosphatase 2C family protein [Populus trichocarpa]
5 Hb_002477_100 0.1787329195 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
6 Hb_043987_010 0.1794099137 - - glutathione s-transferase, putative [Ricinus communis]
7 Hb_000020_070 0.1815966781 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
8 Hb_000092_120 0.1845796498 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Populus euphratica]
9 Hb_000913_080 0.1876670528 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 11 [Jatropha curcas]
10 Hb_001300_170 0.1887770828 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010891_020 0.1947575562 - - Cucumisin precursor, putative [Ricinus communis]
12 Hb_114684_010 0.1950895672 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
13 Hb_000261_420 0.1967884445 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
14 Hb_018212_010 0.1991081151 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
15 Hb_002030_180 0.1992197405 - - ring finger protein, putative [Ricinus communis]
16 Hb_004032_090 0.200011494 - - PREDICTED: protein AIG1 [Jatropha curcas]
17 Hb_000575_090 0.200156029 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Populus euphratica]
18 Hb_000914_130 0.2001929306 - - copper-transporting atpase p-type, putative [Ricinus communis]
19 Hb_011618_100 0.2003834984 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
20 Hb_007425_020 0.2017964723 transcription factor TF Family: ERF PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Jatropha curcas]

Gene co-expression network

sample Hb_000320_020 Hb_000320_020 Hb_000005_340 Hb_000005_340 Hb_000320_020--Hb_000005_340 Hb_000009_150 Hb_000009_150 Hb_000320_020--Hb_000009_150 Hb_001433_160 Hb_001433_160 Hb_000320_020--Hb_001433_160 Hb_002477_100 Hb_002477_100 Hb_000320_020--Hb_002477_100 Hb_043987_010 Hb_043987_010 Hb_000320_020--Hb_043987_010 Hb_000020_070 Hb_000020_070 Hb_000320_020--Hb_000020_070 Hb_019863_030 Hb_019863_030 Hb_000005_340--Hb_019863_030 Hb_000024_130 Hb_000024_130 Hb_000005_340--Hb_000024_130 Hb_000847_020 Hb_000847_020 Hb_000005_340--Hb_000847_020 Hb_000005_340--Hb_001433_160 Hb_000007_430 Hb_000007_430 Hb_000005_340--Hb_000007_430 Hb_001287_060 Hb_001287_060 Hb_000005_340--Hb_001287_060 Hb_003430_070 Hb_003430_070 Hb_000009_150--Hb_003430_070 Hb_000009_150--Hb_001433_160 Hb_005080_020 Hb_005080_020 Hb_000009_150--Hb_005080_020 Hb_004032_090 Hb_004032_090 Hb_000009_150--Hb_004032_090 Hb_000329_790 Hb_000329_790 Hb_000009_150--Hb_000329_790 Hb_048476_040 Hb_048476_040 Hb_000009_150--Hb_048476_040 Hb_002284_080 Hb_002284_080 Hb_001433_160--Hb_002284_080 Hb_000002_360 Hb_000002_360 Hb_001433_160--Hb_000002_360 Hb_000009_300 Hb_000009_300 Hb_001433_160--Hb_000009_300 Hb_001433_160--Hb_000024_130 Hb_003670_030 Hb_003670_030 Hb_001433_160--Hb_003670_030 Hb_002477_100--Hb_043987_010 Hb_002030_180 Hb_002030_180 Hb_002477_100--Hb_002030_180 Hb_023278_030 Hb_023278_030 Hb_002477_100--Hb_023278_030 Hb_002597_020 Hb_002597_020 Hb_002477_100--Hb_002597_020 Hb_002477_100--Hb_000020_070 Hb_001318_110 Hb_001318_110 Hb_002477_100--Hb_001318_110 Hb_043987_010--Hb_002030_180 Hb_001377_130 Hb_001377_130 Hb_043987_010--Hb_001377_130 Hb_005542_030 Hb_005542_030 Hb_043987_010--Hb_005542_030 Hb_005628_050 Hb_005628_050 Hb_043987_010--Hb_005628_050 Hb_005649_010 Hb_005649_010 Hb_043987_010--Hb_005649_010 Hb_001247_020 Hb_001247_020 Hb_000020_070--Hb_001247_020 Hb_001636_060 Hb_001636_060 Hb_000020_070--Hb_001636_060 Hb_007894_180 Hb_007894_180 Hb_000020_070--Hb_007894_180 Hb_001511_250 Hb_001511_250 Hb_000020_070--Hb_001511_250 Hb_000020_070--Hb_005080_020 Hb_119316_020 Hb_119316_020 Hb_000020_070--Hb_119316_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.199058 33.7364 28.6085 15.3234 0 0.0172469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.90353 10.9777 3.67626 22.123 12.2541

CAGE analysis