Hb_007425_020

Information

Type transcription factor
Description TF Family: ERF
Location Contig7425: 14329-15117
Sequence    

Annotation

kegg
ID pop:POPTR_0019s15190g
description POPTRDRAFT_574464; hypothetical protein
nr
ID XP_012077908.1
description PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Jatropha curcas]
swissprot
ID O04682
description Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1
trembl
ID A0A067LBA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17289 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007425_020 0.0 transcription factor TF Family: ERF PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Jatropha curcas]
2 Hb_000092_120 0.1991971994 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Populus euphratica]
3 Hb_000320_020 0.2017964723 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
4 Hb_012239_010 0.2140204598 - - -
5 Hb_000386_050 0.2174556891 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Jatropha curcas]
6 Hb_002660_120 0.2194988504 - - PREDICTED: putative serine/threonine-protein kinase [Populus euphratica]
7 Hb_011618_100 0.2263593463 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
8 Hb_001616_110 0.2279672443 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
9 Hb_002571_070 0.2339583188 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
10 Hb_002076_030 0.2347921958 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
11 Hb_012239_050 0.2381984915 - - conserved hypothetical protein [Ricinus communis]
12 Hb_027654_080 0.2401213204 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
13 Hb_000049_240 0.2416209733 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
14 Hb_098256_010 0.2425985815 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
15 Hb_001049_160 0.2489212099 - - aldose 1-epimerase, putative [Ricinus communis]
16 Hb_000139_100 0.2514991334 - - PREDICTED: sugar transport protein 13-like [Jatropha curcas]
17 Hb_002968_030 0.2525401669 - - Pectinesterase-1 precursor, putative [Ricinus communis]
18 Hb_001959_120 0.2539007718 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
19 Hb_011872_020 0.2567677165 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH128 [Jatropha curcas]
20 Hb_000671_170 0.2580497831 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007425_020 Hb_007425_020 Hb_000092_120 Hb_000092_120 Hb_007425_020--Hb_000092_120 Hb_000320_020 Hb_000320_020 Hb_007425_020--Hb_000320_020 Hb_012239_010 Hb_012239_010 Hb_007425_020--Hb_012239_010 Hb_000386_050 Hb_000386_050 Hb_007425_020--Hb_000386_050 Hb_002660_120 Hb_002660_120 Hb_007425_020--Hb_002660_120 Hb_011618_100 Hb_011618_100 Hb_007425_020--Hb_011618_100 Hb_027654_080 Hb_027654_080 Hb_000092_120--Hb_027654_080 Hb_003040_040 Hb_003040_040 Hb_000092_120--Hb_003040_040 Hb_000092_120--Hb_002660_120 Hb_010891_020 Hb_010891_020 Hb_000092_120--Hb_010891_020 Hb_000057_130 Hb_000057_130 Hb_000092_120--Hb_000057_130 Hb_002016_140 Hb_002016_140 Hb_000092_120--Hb_002016_140 Hb_000005_340 Hb_000005_340 Hb_000320_020--Hb_000005_340 Hb_000009_150 Hb_000009_150 Hb_000320_020--Hb_000009_150 Hb_001433_160 Hb_001433_160 Hb_000320_020--Hb_001433_160 Hb_002477_100 Hb_002477_100 Hb_000320_020--Hb_002477_100 Hb_043987_010 Hb_043987_010 Hb_000320_020--Hb_043987_010 Hb_000020_070 Hb_000020_070 Hb_000320_020--Hb_000020_070 Hb_098256_010 Hb_098256_010 Hb_012239_010--Hb_098256_010 Hb_001584_380 Hb_001584_380 Hb_012239_010--Hb_001584_380 Hb_012239_050 Hb_012239_050 Hb_012239_010--Hb_012239_050 Hb_002968_030 Hb_002968_030 Hb_012239_010--Hb_002968_030 Hb_003910_050 Hb_003910_050 Hb_012239_010--Hb_003910_050 Hb_004007_200 Hb_004007_200 Hb_000386_050--Hb_004007_200 Hb_000800_010 Hb_000800_010 Hb_000386_050--Hb_000800_010 Hb_187959_010 Hb_187959_010 Hb_000386_050--Hb_187959_010 Hb_006414_010 Hb_006414_010 Hb_000386_050--Hb_006414_010 Hb_001054_060 Hb_001054_060 Hb_000386_050--Hb_001054_060 Hb_012132_020 Hb_012132_020 Hb_000386_050--Hb_012132_020 Hb_011872_020 Hb_011872_020 Hb_002660_120--Hb_011872_020 Hb_001975_040 Hb_001975_040 Hb_002660_120--Hb_001975_040 Hb_002660_120--Hb_027654_080 Hb_001975_030 Hb_001975_030 Hb_002660_120--Hb_001975_030 Hb_028707_070 Hb_028707_070 Hb_002660_120--Hb_028707_070 Hb_000913_080 Hb_000913_080 Hb_011618_100--Hb_000913_080 Hb_000813_160 Hb_000813_160 Hb_011618_100--Hb_000813_160 Hb_091889_020 Hb_091889_020 Hb_011618_100--Hb_091889_020 Hb_011618_100--Hb_027654_080 Hb_014720_050 Hb_014720_050 Hb_011618_100--Hb_014720_050 Hb_002284_080 Hb_002284_080 Hb_011618_100--Hb_002284_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.261949 29.2837 10.5846 16.1782 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.23733 19.9443 1.65995 13.7674 15.9269

CAGE analysis