Hb_079459_010

Information

Type -
Description -
Location Contig79459: 100-524
Sequence    

Annotation

kegg
ID rcu:RCOM_1494740
description hypothetical protein
nr
ID XP_002516070.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQQ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1494740 PE=4 SV=1
Gene Ontology
ID GO:0005737
description dna (cytosine-5)-methyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079459_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_053162_010 0.3169973507 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
3 Hb_000170_180 0.3247925922 - - PREDICTED: uncharacterized protein LOC105109433 [Populus euphratica]
4 Hb_000416_120 0.3343807161 - - Putative LRR receptor-like serine/threonine-protein kinase, partial [Glycine soja]
5 Hb_142382_010 0.3580094607 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
6 Hb_137350_010 0.3592206926 - - PREDICTED: potassium channel SKOR-like [Prunus mume]
7 Hb_014175_010 0.3597511812 - - Uncharacterized protein TCM_033221 [Theobroma cacao]
8 Hb_000319_100 0.3630690712 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
9 Hb_001587_130 0.3630722757 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
10 Hb_000283_170 0.3630756498 - - ATP binding protein, putative [Ricinus communis]
11 Hb_008021_020 0.3630791423 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
12 Hb_007289_010 0.3630809209 - - cytochrome P450, putative [Ricinus communis]
13 Hb_000156_020 0.3630842998 - - PREDICTED: la-related protein 6A [Jatropha curcas]
14 Hb_003176_030 0.3630842998 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]
15 Hb_000940_090 0.3631115418 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
16 Hb_000856_220 0.3632309523 - - hypothetical protein POPTR_0012s07300g [Populus trichocarpa]
17 Hb_002793_010 0.3632434353 - - putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]
18 Hb_185830_040 0.3632571734 - - hypothetical protein JCGZ_16423 [Jatropha curcas]
19 Hb_004000_030 0.3632952609 - - putative retrotransposon protein [Phyllostachys edulis]
20 Hb_181803_010 0.3632977802 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_079459_010 Hb_079459_010 Hb_053162_010 Hb_053162_010 Hb_079459_010--Hb_053162_010 Hb_000170_180 Hb_000170_180 Hb_079459_010--Hb_000170_180 Hb_000416_120 Hb_000416_120 Hb_079459_010--Hb_000416_120 Hb_142382_010 Hb_142382_010 Hb_079459_010--Hb_142382_010 Hb_137350_010 Hb_137350_010 Hb_079459_010--Hb_137350_010 Hb_014175_010 Hb_014175_010 Hb_079459_010--Hb_014175_010 Hb_053162_010--Hb_000416_120 Hb_130067_010 Hb_130067_010 Hb_053162_010--Hb_130067_010 Hb_099448_010 Hb_099448_010 Hb_053162_010--Hb_099448_010 Hb_053162_010--Hb_142382_010 Hb_004033_020 Hb_004033_020 Hb_053162_010--Hb_004033_020 Hb_000614_310 Hb_000614_310 Hb_000170_180--Hb_000614_310 Hb_087388_010 Hb_087388_010 Hb_000170_180--Hb_087388_010 Hb_000347_520 Hb_000347_520 Hb_000170_180--Hb_000347_520 Hb_000367_110 Hb_000367_110 Hb_000170_180--Hb_000367_110 Hb_001195_670 Hb_001195_670 Hb_000170_180--Hb_001195_670 Hb_004308_010 Hb_004308_010 Hb_000170_180--Hb_004308_010 Hb_005854_050 Hb_005854_050 Hb_000416_120--Hb_005854_050 Hb_005597_010 Hb_005597_010 Hb_000416_120--Hb_005597_010 Hb_000416_120--Hb_142382_010 Hb_113803_010 Hb_113803_010 Hb_000416_120--Hb_113803_010 Hb_002267_120 Hb_002267_120 Hb_000416_120--Hb_002267_120 Hb_000416_120--Hb_130067_010 Hb_003090_230 Hb_003090_230 Hb_142382_010--Hb_003090_230 Hb_000676_380 Hb_000676_380 Hb_142382_010--Hb_000676_380 Hb_004875_040 Hb_004875_040 Hb_142382_010--Hb_004875_040 Hb_001856_150 Hb_001856_150 Hb_142382_010--Hb_001856_150 Hb_001775_130 Hb_001775_130 Hb_142382_010--Hb_001775_130 Hb_020805_110 Hb_020805_110 Hb_142382_010--Hb_020805_110 Hb_000106_060 Hb_000106_060 Hb_137350_010--Hb_000106_060 Hb_000934_180 Hb_000934_180 Hb_137350_010--Hb_000934_180 Hb_170861_010 Hb_170861_010 Hb_137350_010--Hb_170861_010 Hb_113945_010 Hb_113945_010 Hb_137350_010--Hb_113945_010 Hb_039096_010 Hb_039096_010 Hb_137350_010--Hb_039096_010 Hb_003212_020 Hb_003212_020 Hb_137350_010--Hb_003212_020 Hb_001112_020 Hb_001112_020 Hb_014175_010--Hb_001112_020 Hb_006829_010 Hb_006829_010 Hb_014175_010--Hb_006829_010 Hb_073146_010 Hb_073146_010 Hb_014175_010--Hb_073146_010 Hb_010728_010 Hb_010728_010 Hb_014175_010--Hb_010728_010 Hb_075888_010 Hb_075888_010 Hb_014175_010--Hb_075888_010 Hb_000149_070 Hb_000149_070 Hb_014175_010--Hb_000149_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.914163 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.542197 0 0 0.80333 0

CAGE analysis