Hb_001112_020

Information

Type -
Description -
Location Contig1112: 23310-24701
Sequence    

Annotation

kegg
ID pda:103717724
description uncharacterized LOC103717724
nr
ID XP_008804436.1
description PREDICTED: uncharacterized protein LOC103717724, partial [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001112_020 0.0 - - PREDICTED: uncharacterized protein LOC103717724, partial [Phoenix dactylifera]
2 Hb_014175_010 0.09420358 - - Uncharacterized protein TCM_033221 [Theobroma cacao]
3 Hb_073146_010 0.2703158048 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
4 Hb_006829_010 0.3110168568 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_010490_030 0.3390142676 - - -
6 Hb_114893_050 0.3555248895 - - Uncharacterized protein isoform 3 [Theobroma cacao]
7 Hb_002719_070 0.3561232062 - - gibberellin 20-oxidase, putative [Ricinus communis]
8 Hb_000504_110 0.3639530669 - - F-box/LRR-repeat protein, putative [Ricinus communis]
9 Hb_074197_060 0.3670521329 - - PREDICTED: probable protein S-acyltransferase 14 isoform X1 [Populus euphratica]
10 Hb_075888_010 0.371165556 - - PREDICTED: 25S rRNA (cytosine-C(5))-methyltransferase nop2-like [Solanum lycopersicum]
11 Hb_053162_010 0.3719471845 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
12 Hb_002043_110 0.3760432702 - - hypothetical protein POPTR_0001s19500g [Populus trichocarpa]
13 Hb_001828_030 0.3778451765 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
14 Hb_183209_010 0.377969024 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
15 Hb_079459_010 0.3838345292 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000307_120 0.3843993191 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
17 Hb_001776_230 0.3924029866 - - PREDICTED: uncharacterized protein LOC104884260 [Beta vulgaris subsp. vulgaris]
18 Hb_032823_010 0.3990413136 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010728_010 0.4009391325 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
20 Hb_005779_050 0.4012136506 - - hypothetical protein JCGZ_14616 [Jatropha curcas]

Gene co-expression network

sample Hb_001112_020 Hb_001112_020 Hb_014175_010 Hb_014175_010 Hb_001112_020--Hb_014175_010 Hb_073146_010 Hb_073146_010 Hb_001112_020--Hb_073146_010 Hb_006829_010 Hb_006829_010 Hb_001112_020--Hb_006829_010 Hb_010490_030 Hb_010490_030 Hb_001112_020--Hb_010490_030 Hb_114893_050 Hb_114893_050 Hb_001112_020--Hb_114893_050 Hb_002719_070 Hb_002719_070 Hb_001112_020--Hb_002719_070 Hb_014175_010--Hb_006829_010 Hb_014175_010--Hb_073146_010 Hb_010728_010 Hb_010728_010 Hb_014175_010--Hb_010728_010 Hb_075888_010 Hb_075888_010 Hb_014175_010--Hb_075888_010 Hb_000149_070 Hb_000149_070 Hb_014175_010--Hb_000149_070 Hb_183209_010 Hb_183209_010 Hb_073146_010--Hb_183209_010 Hb_006198_140 Hb_006198_140 Hb_073146_010--Hb_006198_140 Hb_002774_090 Hb_002774_090 Hb_073146_010--Hb_002774_090 Hb_001318_130 Hb_001318_130 Hb_073146_010--Hb_001318_130 Hb_032823_010 Hb_032823_010 Hb_006829_010--Hb_032823_010 Hb_002821_020 Hb_002821_020 Hb_006829_010--Hb_002821_020 Hb_005539_270 Hb_005539_270 Hb_006829_010--Hb_005539_270 Hb_004586_400 Hb_004586_400 Hb_006829_010--Hb_004586_400 Hb_000163_300 Hb_000163_300 Hb_006829_010--Hb_000163_300 Hb_005155_040 Hb_005155_040 Hb_006829_010--Hb_005155_040 Hb_074197_060 Hb_074197_060 Hb_010490_030--Hb_074197_060 Hb_005779_050 Hb_005779_050 Hb_010490_030--Hb_005779_050 Hb_007105_010 Hb_007105_010 Hb_010490_030--Hb_007105_010 Hb_004102_120 Hb_004102_120 Hb_010490_030--Hb_004102_120 Hb_062827_010 Hb_062827_010 Hb_010490_030--Hb_062827_010 Hb_003861_130 Hb_003861_130 Hb_010490_030--Hb_003861_130 Hb_003918_020 Hb_003918_020 Hb_114893_050--Hb_003918_020 Hb_009986_010 Hb_009986_010 Hb_114893_050--Hb_009986_010 Hb_000066_160 Hb_000066_160 Hb_114893_050--Hb_000066_160 Hb_002094_050 Hb_002094_050 Hb_114893_050--Hb_002094_050 Hb_026747_020 Hb_026747_020 Hb_114893_050--Hb_026747_020 Hb_011609_160 Hb_011609_160 Hb_002719_070--Hb_011609_160 Hb_001189_060 Hb_001189_060 Hb_002719_070--Hb_001189_060 Hb_002719_070--Hb_010490_030 Hb_031004_010 Hb_031004_010 Hb_002719_070--Hb_031004_010 Hb_135978_010 Hb_135978_010 Hb_002719_070--Hb_135978_010 Hb_004488_010 Hb_004488_010 Hb_002719_070--Hb_004488_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0303286 0 0.0280558 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0690906 0 0 0.0440043 0

CAGE analysis