Hb_002821_020

Information

Type desease resistance
Description Gene Name: ABC_tran
Location Contig2821: 9964-16250
Sequence    

Annotation

kegg
ID vvi:100253698
description ABC transporter C family member 4
nr
ID XP_002265012.1
description PREDICTED: ABC transporter C family member 4 [Vitis vinifera]
swissprot
ID Q7DM58
description ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=2 SV=2
trembl
ID F6HZ38
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g00260 PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002821_020 0.0 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter C family member 4 [Vitis vinifera]
2 Hb_000163_300 0.0975495777 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
3 Hb_006829_010 0.2313558558 - - receptor protein kinase, putative [Ricinus communis]
4 Hb_000390_260 0.2637811678 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
5 Hb_012098_170 0.2682985617 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_16874 [Jatropha curcas]
6 Hb_000213_090 0.2784990033 - - hypothetical protein OsI_39056 [Oryza sativa Indica Group]
7 Hb_017987_040 0.2862988643 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
8 Hb_024621_030 0.2888528245 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
9 Hb_003835_040 0.2892914707 - - PREDICTED: UDP-glycosyltransferase 91A1-like [Jatropha curcas]
10 Hb_000165_210 0.2914016241 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
11 Hb_005779_040 0.2917297068 - - -
12 Hb_043768_010 0.2962019798 - - PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
13 Hb_003878_100 0.2971363615 desease resistance Gene Name: NB-ARC LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
14 Hb_006198_150 0.2996680988 - - -
15 Hb_002304_140 0.300773617 - - ring finger protein, putative [Ricinus communis]
16 Hb_003120_040 0.3012211438 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
17 Hb_000679_240 0.3023923407 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
18 Hb_001649_040 0.3035118654 - - Polygalacturonase precursor, putative [Ricinus communis]
19 Hb_001952_110 0.3036489677 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
20 Hb_004195_180 0.3040663483 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_002821_020 Hb_002821_020 Hb_000163_300 Hb_000163_300 Hb_002821_020--Hb_000163_300 Hb_006829_010 Hb_006829_010 Hb_002821_020--Hb_006829_010 Hb_000390_260 Hb_000390_260 Hb_002821_020--Hb_000390_260 Hb_012098_170 Hb_012098_170 Hb_002821_020--Hb_012098_170 Hb_000213_090 Hb_000213_090 Hb_002821_020--Hb_000213_090 Hb_017987_040 Hb_017987_040 Hb_002821_020--Hb_017987_040 Hb_000163_300--Hb_017987_040 Hb_002555_020 Hb_002555_020 Hb_000163_300--Hb_002555_020 Hb_006198_150 Hb_006198_150 Hb_000163_300--Hb_006198_150 Hb_004195_190 Hb_004195_190 Hb_000163_300--Hb_004195_190 Hb_000679_240 Hb_000679_240 Hb_000163_300--Hb_000679_240 Hb_032823_010 Hb_032823_010 Hb_006829_010--Hb_032823_010 Hb_005539_270 Hb_005539_270 Hb_006829_010--Hb_005539_270 Hb_004586_400 Hb_004586_400 Hb_006829_010--Hb_004586_400 Hb_006829_010--Hb_000163_300 Hb_005155_040 Hb_005155_040 Hb_006829_010--Hb_005155_040 Hb_024621_030 Hb_024621_030 Hb_000390_260--Hb_024621_030 Hb_003992_250 Hb_003992_250 Hb_000390_260--Hb_003992_250 Hb_000975_150 Hb_000975_150 Hb_000390_260--Hb_000975_150 Hb_004195_180 Hb_004195_180 Hb_000390_260--Hb_004195_180 Hb_002006_140 Hb_002006_140 Hb_000390_260--Hb_002006_140 Hb_027472_230 Hb_027472_230 Hb_000390_260--Hb_027472_230 Hb_067034_030 Hb_067034_030 Hb_012098_170--Hb_067034_030 Hb_001114_070 Hb_001114_070 Hb_012098_170--Hb_001114_070 Hb_007919_040 Hb_007919_040 Hb_012098_170--Hb_007919_040 Hb_006501_170 Hb_006501_170 Hb_012098_170--Hb_006501_170 Hb_006573_300 Hb_006573_300 Hb_012098_170--Hb_006573_300 Hb_000645_240 Hb_000645_240 Hb_012098_170--Hb_000645_240 Hb_000175_020 Hb_000175_020 Hb_000213_090--Hb_000175_020 Hb_001210_100 Hb_001210_100 Hb_000213_090--Hb_001210_100 Hb_000327_070 Hb_000327_070 Hb_000213_090--Hb_000327_070 Hb_053929_010 Hb_053929_010 Hb_000213_090--Hb_053929_010 Hb_000046_340 Hb_000046_340 Hb_000213_090--Hb_000046_340 Hb_005000_220 Hb_005000_220 Hb_017987_040--Hb_005000_220 Hb_017987_040--Hb_006198_150 Hb_001489_030 Hb_001489_030 Hb_017987_040--Hb_001489_030 Hb_008503_020 Hb_008503_020 Hb_017987_040--Hb_008503_020 Hb_007666_040 Hb_007666_040 Hb_017987_040--Hb_007666_040 Hb_008053_070 Hb_008053_070 Hb_017987_040--Hb_008053_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.57697 0.525541 0.175499 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.61918 1.03752 0.0194913 10.1283 1.609

CAGE analysis