Hb_004586_400

Information

Type transcription factor
Description TF Family: bHLH
Location Contig4586: 428622-430004
Sequence    

Annotation

kegg
ID rcu:RCOM_1037580
description DNA binding protein, putative
nr
ID XP_002513985.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9C7T4
description Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1
trembl
ID B9RJR6
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1037580 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh96-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_400 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_002173_060 0.1525910364 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
3 Hb_001515_050 0.1794795788 - - PREDICTED: uncharacterized protein LOC105636626 [Jatropha curcas]
4 Hb_005183_200 0.1851455879 - - EG964 [Manihot glaziovii]
5 Hb_032823_010 0.192627905 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000720_210 0.2005388482 - - carbonyl reductase, putative [Ricinus communis]
7 Hb_043768_010 0.2145427183 - - PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
8 Hb_013749_060 0.2145648394 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
9 Hb_004044_030 0.2155236552 - - PREDICTED: uncharacterized protein LOC105639335 [Jatropha curcas]
10 Hb_003439_020 0.2176968756 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1-like [Solanum lycopersicum]
11 Hb_126466_010 0.220434593 - - alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_008226_120 0.2215966369 - - ATP binding protein, putative [Ricinus communis]
13 Hb_001401_070 0.2217856554 - - glycogenin, putative [Ricinus communis]
14 Hb_003430_020 0.221814753 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
15 Hb_000589_220 0.222436107 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_001862_060 0.2225044803 - - PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
17 Hb_000589_180 0.2246507635 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
18 Hb_000679_240 0.2261347411 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
19 Hb_052764_080 0.2294012154 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
20 Hb_006111_090 0.2311456336 - - hypothetical protein JCGZ_26825 [Jatropha curcas]

Gene co-expression network

sample Hb_004586_400 Hb_004586_400 Hb_002173_060 Hb_002173_060 Hb_004586_400--Hb_002173_060 Hb_001515_050 Hb_001515_050 Hb_004586_400--Hb_001515_050 Hb_005183_200 Hb_005183_200 Hb_004586_400--Hb_005183_200 Hb_032823_010 Hb_032823_010 Hb_004586_400--Hb_032823_010 Hb_000720_210 Hb_000720_210 Hb_004586_400--Hb_000720_210 Hb_043768_010 Hb_043768_010 Hb_004586_400--Hb_043768_010 Hb_000844_100 Hb_000844_100 Hb_002173_060--Hb_000844_100 Hb_182021_010 Hb_182021_010 Hb_002173_060--Hb_182021_010 Hb_008140_060 Hb_008140_060 Hb_002173_060--Hb_008140_060 Hb_000589_180 Hb_000589_180 Hb_002173_060--Hb_000589_180 Hb_009581_050 Hb_009581_050 Hb_002173_060--Hb_009581_050 Hb_094637_010 Hb_094637_010 Hb_002173_060--Hb_094637_010 Hb_001515_050--Hb_005183_200 Hb_003430_020 Hb_003430_020 Hb_001515_050--Hb_003430_020 Hb_000856_240 Hb_000856_240 Hb_001515_050--Hb_000856_240 Hb_003439_020 Hb_003439_020 Hb_001515_050--Hb_003439_020 Hb_000255_020 Hb_000255_020 Hb_001515_050--Hb_000255_020 Hb_000045_180 Hb_000045_180 Hb_001515_050--Hb_000045_180 Hb_005183_200--Hb_003430_020 Hb_005183_200--Hb_003439_020 Hb_009581_040 Hb_009581_040 Hb_005183_200--Hb_009581_040 Hb_052764_080 Hb_052764_080 Hb_005183_200--Hb_052764_080 Hb_074312_020 Hb_074312_020 Hb_005183_200--Hb_074312_020 Hb_032823_010--Hb_002173_060 Hb_000029_370 Hb_000029_370 Hb_032823_010--Hb_000029_370 Hb_000638_090 Hb_000638_090 Hb_032823_010--Hb_000638_090 Hb_010326_030 Hb_010326_030 Hb_032823_010--Hb_010326_030 Hb_001408_050 Hb_001408_050 Hb_032823_010--Hb_001408_050 Hb_107543_010 Hb_107543_010 Hb_000720_210--Hb_107543_010 Hb_006316_030 Hb_006316_030 Hb_000720_210--Hb_006316_030 Hb_000720_210--Hb_052764_080 Hb_000120_070 Hb_000120_070 Hb_000720_210--Hb_000120_070 Hb_001369_070 Hb_001369_070 Hb_000720_210--Hb_001369_070 Hb_000720_210--Hb_074312_020 Hb_002217_200 Hb_002217_200 Hb_043768_010--Hb_002217_200 Hb_001365_050 Hb_001365_050 Hb_043768_010--Hb_001365_050 Hb_001006_280 Hb_001006_280 Hb_043768_010--Hb_001006_280 Hb_000034_030 Hb_000034_030 Hb_043768_010--Hb_000034_030 Hb_003106_210 Hb_003106_210 Hb_043768_010--Hb_003106_210 Hb_003767_010 Hb_003767_010 Hb_043768_010--Hb_003767_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.194744 0.015597 0.102029 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0477054 0 0 0.165792 0.0770208

CAGE analysis