Hb_000163_300

Information

Type -
Description -
Location Contig163: 203300-208710
Sequence    

Annotation

kegg
ID rcu:RCOM_1177870
description multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative (EC:1.3.1.74)
nr
ID XP_002523063.1
description multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
swissprot
ID Q7DM58
description ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=2 SV=2
trembl
ID B9SAP4
description Multidrug resistance-associated protein 2, 6 (Mrp2, 6), abc-transoprter, putative OS=Ricinus communis GN=RCOM_1177870 PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter c family member 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_300 0.0 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
2 Hb_002821_020 0.0975495777 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter C family member 4 [Vitis vinifera]
3 Hb_017987_040 0.2196068046 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
4 Hb_002555_020 0.2375906605 - - Receptor-like protein kinase [Medicago truncatula]
5 Hb_006198_150 0.2432257883 - - -
6 Hb_004195_190 0.2519822262 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_000679_240 0.2525527285 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
8 Hb_005000_220 0.252928353 - - gulonolactone oxidase, putative [Ricinus communis]
9 Hb_012098_170 0.2552898326 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_16874 [Jatropha curcas]
10 Hb_000512_040 0.2581640511 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_003878_100 0.2587966934 desease resistance Gene Name: NB-ARC LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
12 Hb_000836_510 0.2600593405 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000203_060 0.261908386 transcription factor TF Family: G2-like hypothetical protein POPTR_0004s05660g [Populus trichocarpa]
14 Hb_001454_160 0.2649449337 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
15 Hb_000976_060 0.2652658745 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
16 Hb_006829_010 0.2663273634 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_008503_020 0.2706491332 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
18 Hb_001952_110 0.2725875771 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
19 Hb_001489_030 0.2738600839 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
20 Hb_003835_040 0.273949665 - - PREDICTED: UDP-glycosyltransferase 91A1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000163_300 Hb_000163_300 Hb_002821_020 Hb_002821_020 Hb_000163_300--Hb_002821_020 Hb_017987_040 Hb_017987_040 Hb_000163_300--Hb_017987_040 Hb_002555_020 Hb_002555_020 Hb_000163_300--Hb_002555_020 Hb_006198_150 Hb_006198_150 Hb_000163_300--Hb_006198_150 Hb_004195_190 Hb_004195_190 Hb_000163_300--Hb_004195_190 Hb_000679_240 Hb_000679_240 Hb_000163_300--Hb_000679_240 Hb_006829_010 Hb_006829_010 Hb_002821_020--Hb_006829_010 Hb_000390_260 Hb_000390_260 Hb_002821_020--Hb_000390_260 Hb_012098_170 Hb_012098_170 Hb_002821_020--Hb_012098_170 Hb_000213_090 Hb_000213_090 Hb_002821_020--Hb_000213_090 Hb_002821_020--Hb_017987_040 Hb_005000_220 Hb_005000_220 Hb_017987_040--Hb_005000_220 Hb_017987_040--Hb_006198_150 Hb_001489_030 Hb_001489_030 Hb_017987_040--Hb_001489_030 Hb_008503_020 Hb_008503_020 Hb_017987_040--Hb_008503_020 Hb_007666_040 Hb_007666_040 Hb_017987_040--Hb_007666_040 Hb_008053_070 Hb_008053_070 Hb_017987_040--Hb_008053_070 Hb_001454_160 Hb_001454_160 Hb_002555_020--Hb_001454_160 Hb_018563_040 Hb_018563_040 Hb_002555_020--Hb_018563_040 Hb_002555_020--Hb_004195_190 Hb_000976_060 Hb_000976_060 Hb_002555_020--Hb_000976_060 Hb_002555_020--Hb_001489_030 Hb_005542_110 Hb_005542_110 Hb_002555_020--Hb_005542_110 Hb_007729_010 Hb_007729_010 Hb_006198_150--Hb_007729_010 Hb_002019_030 Hb_002019_030 Hb_006198_150--Hb_002019_030 Hb_000836_510 Hb_000836_510 Hb_006198_150--Hb_000836_510 Hb_000185_060 Hb_000185_060 Hb_006198_150--Hb_000185_060 Hb_000856_350 Hb_000856_350 Hb_006198_150--Hb_000856_350 Hb_004195_190--Hb_001454_160 Hb_000521_300 Hb_000521_300 Hb_004195_190--Hb_000521_300 Hb_004195_190--Hb_001489_030 Hb_004619_010 Hb_004619_010 Hb_004195_190--Hb_004619_010 Hb_004195_190--Hb_000679_240 Hb_067034_030 Hb_067034_030 Hb_000679_240--Hb_067034_030 Hb_000589_180 Hb_000589_180 Hb_000679_240--Hb_000589_180 Hb_000679_240--Hb_000521_300 Hb_000679_240--Hb_002555_020 Hb_000086_370 Hb_000086_370 Hb_000679_240--Hb_000086_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 16.8403 0.855938 0.174541 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.90334 1.3245 0 19.0022 3.18025

CAGE analysis