Hb_000213_090

Information

Type -
Description -
Location Contig213: 180744-182138
Sequence    

Annotation

kegg
ID mus:103994358
description L-type lectin-domain containing receptor kinase IX.1-like
nr
ID EEC69649.1
description hypothetical protein OsI_39056 [Oryza sativa Indica Group]
swissprot
ID -
description -
trembl
ID A0A0D3D5X1
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0005488
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000213_090 0.0 - - hypothetical protein OsI_39056 [Oryza sativa Indica Group]
2 Hb_000175_020 0.229901392 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001210_100 0.2602266191 - - Gibberellin 20 oxidase, putative [Ricinus communis]
4 Hb_000327_070 0.2628821756 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
5 Hb_053929_010 0.2744449477 - - hypothetical protein POPTR_0010s22320g [Populus trichocarpa]
6 Hb_002821_020 0.2784990033 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter C family member 4 [Vitis vinifera]
7 Hb_000046_340 0.2796687128 - - -
8 Hb_000343_040 0.2946994336 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
9 Hb_010672_080 0.2994245421 transcription factor TF Family: MYB hypothetical protein JCGZ_00902 [Jatropha curcas]
10 Hb_000009_440 0.3008282008 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
11 Hb_002200_060 0.3033518708 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
12 Hb_001006_280 0.3052005896 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
13 Hb_001405_150 0.3052991937 - - PREDICTED: protein At-4/1 [Jatropha curcas]
14 Hb_000265_080 0.3058608896 - - Vacuolar cation/proton exchanger, putative [Ricinus communis]
15 Hb_000116_590 0.3103236327 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
16 Hb_024570_020 0.3127305091 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
17 Hb_000149_120 0.3127750913 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
18 Hb_002928_220 0.3128932893 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
19 Hb_038670_010 0.313020355 - - Major allergen Pru ar, putative [Ricinus communis]
20 Hb_009486_100 0.3130328144 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000213_090 Hb_000213_090 Hb_000175_020 Hb_000175_020 Hb_000213_090--Hb_000175_020 Hb_001210_100 Hb_001210_100 Hb_000213_090--Hb_001210_100 Hb_000327_070 Hb_000327_070 Hb_000213_090--Hb_000327_070 Hb_053929_010 Hb_053929_010 Hb_000213_090--Hb_053929_010 Hb_002821_020 Hb_002821_020 Hb_000213_090--Hb_002821_020 Hb_000046_340 Hb_000046_340 Hb_000213_090--Hb_000046_340 Hb_002188_140 Hb_002188_140 Hb_000175_020--Hb_002188_140 Hb_000061_090 Hb_000061_090 Hb_000175_020--Hb_000061_090 Hb_074506_010 Hb_074506_010 Hb_000175_020--Hb_074506_010 Hb_004657_060 Hb_004657_060 Hb_000175_020--Hb_004657_060 Hb_007044_100 Hb_007044_100 Hb_000175_020--Hb_007044_100 Hb_006916_180 Hb_006916_180 Hb_001210_100--Hb_006916_180 Hb_001534_040 Hb_001534_040 Hb_001210_100--Hb_001534_040 Hb_003935_010 Hb_003935_010 Hb_001210_100--Hb_003935_010 Hb_002000_120 Hb_002000_120 Hb_001210_100--Hb_002000_120 Hb_005743_030 Hb_005743_030 Hb_001210_100--Hb_005743_030 Hb_005436_030 Hb_005436_030 Hb_001210_100--Hb_005436_030 Hb_004041_100 Hb_004041_100 Hb_000327_070--Hb_004041_100 Hb_000327_070--Hb_053929_010 Hb_126398_020 Hb_126398_020 Hb_000327_070--Hb_126398_020 Hb_003845_020 Hb_003845_020 Hb_000327_070--Hb_003845_020 Hb_001776_010 Hb_001776_010 Hb_000327_070--Hb_001776_010 Hb_000853_060 Hb_000853_060 Hb_000327_070--Hb_000853_060 Hb_000656_200 Hb_000656_200 Hb_053929_010--Hb_000656_200 Hb_053929_010--Hb_126398_020 Hb_000375_250 Hb_000375_250 Hb_053929_010--Hb_000375_250 Hb_170878_070 Hb_170878_070 Hb_053929_010--Hb_170878_070 Hb_101449_010 Hb_101449_010 Hb_053929_010--Hb_101449_010 Hb_000163_300 Hb_000163_300 Hb_002821_020--Hb_000163_300 Hb_006829_010 Hb_006829_010 Hb_002821_020--Hb_006829_010 Hb_000390_260 Hb_000390_260 Hb_002821_020--Hb_000390_260 Hb_012098_170 Hb_012098_170 Hb_002821_020--Hb_012098_170 Hb_017987_040 Hb_017987_040 Hb_002821_020--Hb_017987_040 Hb_000575_110 Hb_000575_110 Hb_000046_340--Hb_000575_110 Hb_009486_100 Hb_009486_100 Hb_000046_340--Hb_009486_100 Hb_144004_010 Hb_144004_010 Hb_000046_340--Hb_144004_010 Hb_008489_010 Hb_008489_010 Hb_000046_340--Hb_008489_010 Hb_001172_030 Hb_001172_030 Hb_000046_340--Hb_001172_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0606294 0.0648817 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0489096 0.0384683 0 0.216431 0.0788552

CAGE analysis