Hb_000046_340

Information

Type -
Description -
Location Contig46: 265052-266430
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A0D2RPC1
description Gossypium raimondii chromosome 11, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_011G186000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43644: 265033-265157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_340 0.0 - - -
2 Hb_000575_110 0.2402004226 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
3 Hb_009486_100 0.2633781223 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_144004_010 0.2776351232 - - hypothetical protein JCGZ_01009 [Jatropha curcas]
5 Hb_000213_090 0.2796687128 - - hypothetical protein OsI_39056 [Oryza sativa Indica Group]
6 Hb_008489_010 0.2809630497 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
7 Hb_001172_030 0.2824790418 - - PREDICTED: protein NRT1/ PTR FAMILY 7.2-like isoform X1 [Jatropha curcas]
8 Hb_001675_230 0.2860766125 - - scab resistance family protein [Populus trichocarpa]
9 Hb_115414_010 0.2866301307 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
10 Hb_006120_020 0.2870448731 - - -
11 Hb_056101_010 0.2876609378 - - hypothetical protein POPTR_0391s00200g [Populus trichocarpa]
12 Hb_114025_010 0.290173371 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
13 Hb_015227_010 0.2937215059 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
14 Hb_022815_020 0.2950993361 - - PREDICTED: uncharacterized protein LOC105650107 [Jatropha curcas]
15 Hb_004712_080 0.2953618577 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
16 Hb_008080_050 0.2966892893 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_074892_010 0.2996441328 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
18 Hb_001959_280 0.3001989597 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
19 Hb_000101_360 0.3007192263 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
20 Hb_000380_130 0.3010383354 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000046_340 Hb_000046_340 Hb_000575_110 Hb_000575_110 Hb_000046_340--Hb_000575_110 Hb_009486_100 Hb_009486_100 Hb_000046_340--Hb_009486_100 Hb_144004_010 Hb_144004_010 Hb_000046_340--Hb_144004_010 Hb_000213_090 Hb_000213_090 Hb_000046_340--Hb_000213_090 Hb_008489_010 Hb_008489_010 Hb_000046_340--Hb_008489_010 Hb_001172_030 Hb_001172_030 Hb_000046_340--Hb_001172_030 Hb_000422_020 Hb_000422_020 Hb_000575_110--Hb_000422_020 Hb_000575_110--Hb_009486_100 Hb_056101_010 Hb_056101_010 Hb_000575_110--Hb_056101_010 Hb_025526_010 Hb_025526_010 Hb_000575_110--Hb_025526_010 Hb_002048_010 Hb_002048_010 Hb_000575_110--Hb_002048_010 Hb_003900_050 Hb_003900_050 Hb_000575_110--Hb_003900_050 Hb_005116_010 Hb_005116_010 Hb_009486_100--Hb_005116_010 Hb_002928_220 Hb_002928_220 Hb_009486_100--Hb_002928_220 Hb_009486_100--Hb_056101_010 Hb_009812_010 Hb_009812_010 Hb_009486_100--Hb_009812_010 Hb_001454_300 Hb_001454_300 Hb_009486_100--Hb_001454_300 Hb_005389_190 Hb_005389_190 Hb_144004_010--Hb_005389_190 Hb_000363_470 Hb_000363_470 Hb_144004_010--Hb_000363_470 Hb_003517_010 Hb_003517_010 Hb_144004_010--Hb_003517_010 Hb_112203_010 Hb_112203_010 Hb_144004_010--Hb_112203_010 Hb_001675_230 Hb_001675_230 Hb_144004_010--Hb_001675_230 Hb_000666_020 Hb_000666_020 Hb_144004_010--Hb_000666_020 Hb_000175_020 Hb_000175_020 Hb_000213_090--Hb_000175_020 Hb_001210_100 Hb_001210_100 Hb_000213_090--Hb_001210_100 Hb_000327_070 Hb_000327_070 Hb_000213_090--Hb_000327_070 Hb_053929_010 Hb_053929_010 Hb_000213_090--Hb_053929_010 Hb_002821_020 Hb_002821_020 Hb_000213_090--Hb_002821_020 Hb_135684_010 Hb_135684_010 Hb_008489_010--Hb_135684_010 Hb_015227_010 Hb_015227_010 Hb_008489_010--Hb_015227_010 Hb_115414_010 Hb_115414_010 Hb_008489_010--Hb_115414_010 Hb_010866_010 Hb_010866_010 Hb_008489_010--Hb_010866_010 Hb_169514_010 Hb_169514_010 Hb_008489_010--Hb_169514_010 Hb_008489_010--Hb_001172_030 Hb_022815_020 Hb_022815_020 Hb_001172_030--Hb_022815_020 Hb_033843_020 Hb_033843_020 Hb_001172_030--Hb_033843_020 Hb_035726_020 Hb_035726_020 Hb_001172_030--Hb_035726_020 Hb_001172_030--Hb_115414_010 Hb_001003_020 Hb_001003_020 Hb_001172_030--Hb_001003_020 Hb_000659_010 Hb_000659_010 Hb_001172_030--Hb_000659_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.106043 0.0781363 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.233896 0 0 1.20307 0.313571

CAGE analysis