Hb_000175_020

Information

Type -
Description -
Location Contig175: 6925-13794
Sequence    

Annotation

kegg
ID rcu:RCOM_0901110
description hypothetical protein
nr
ID XP_002517664.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RV95
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0901110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000213_090 0.229901392 - - hypothetical protein OsI_39056 [Oryza sativa Indica Group]
3 Hb_002188_140 0.2461878314 - - PREDICTED: uncharacterized protein LOC105650814 [Jatropha curcas]
4 Hb_000061_090 0.2560923766 - - hypothetical protein B456_003G0981001, partial [Gossypium raimondii]
5 Hb_074506_010 0.2602334892 - - JHL25H03.10 [Jatropha curcas]
6 Hb_004657_060 0.2715459738 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
7 Hb_007044_100 0.2776253589 - - hypothetical protein POPTR_0004s10420g [Populus trichocarpa]
8 Hb_008948_120 0.2781901133 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
9 Hb_000828_050 0.2808349266 - - unnamed protein product [Vitis vinifera]
10 Hb_000327_070 0.2828250637 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
11 Hb_126398_020 0.2850504641 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001621_010 0.2879267005 - - PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
13 Hb_008759_020 0.2882164175 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
14 Hb_002660_120 0.2893788987 - - PREDICTED: putative serine/threonine-protein kinase [Populus euphratica]
15 Hb_000203_140 0.2915645943 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
16 Hb_002552_020 0.2923346712 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
17 Hb_007423_020 0.2934747275 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
18 Hb_004136_030 0.2934803509 - - -
19 Hb_000041_010 0.2949252104 - - pfkB-type carbohydrate kinase family protein [Populus trichocarpa]
20 Hb_005227_040 0.2953023531 transcription factor TF Family: HB unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000175_020 Hb_000175_020 Hb_000213_090 Hb_000213_090 Hb_000175_020--Hb_000213_090 Hb_002188_140 Hb_002188_140 Hb_000175_020--Hb_002188_140 Hb_000061_090 Hb_000061_090 Hb_000175_020--Hb_000061_090 Hb_074506_010 Hb_074506_010 Hb_000175_020--Hb_074506_010 Hb_004657_060 Hb_004657_060 Hb_000175_020--Hb_004657_060 Hb_007044_100 Hb_007044_100 Hb_000175_020--Hb_007044_100 Hb_001210_100 Hb_001210_100 Hb_000213_090--Hb_001210_100 Hb_000327_070 Hb_000327_070 Hb_000213_090--Hb_000327_070 Hb_053929_010 Hb_053929_010 Hb_000213_090--Hb_053929_010 Hb_002821_020 Hb_002821_020 Hb_000213_090--Hb_002821_020 Hb_000046_340 Hb_000046_340 Hb_000213_090--Hb_000046_340 Hb_063405_020 Hb_063405_020 Hb_002188_140--Hb_063405_020 Hb_015690_010 Hb_015690_010 Hb_002188_140--Hb_015690_010 Hb_062671_010 Hb_062671_010 Hb_002188_140--Hb_062671_010 Hb_000828_050 Hb_000828_050 Hb_002188_140--Hb_000828_050 Hb_000230_030 Hb_000230_030 Hb_002188_140--Hb_000230_030 Hb_000414_110 Hb_000414_110 Hb_000061_090--Hb_000414_110 Hb_000879_190 Hb_000879_190 Hb_000061_090--Hb_000879_190 Hb_007423_020 Hb_007423_020 Hb_000061_090--Hb_007423_020 Hb_000011_290 Hb_000011_290 Hb_000061_090--Hb_000011_290 Hb_003947_040 Hb_003947_040 Hb_000061_090--Hb_003947_040 Hb_002539_020 Hb_002539_020 Hb_000061_090--Hb_002539_020 Hb_074506_010--Hb_004657_060 Hb_000853_060 Hb_000853_060 Hb_074506_010--Hb_000853_060 Hb_000453_240 Hb_000453_240 Hb_074506_010--Hb_000453_240 Hb_152868_030 Hb_152868_030 Hb_074506_010--Hb_152868_030 Hb_011633_040 Hb_011633_040 Hb_074506_010--Hb_011633_040 Hb_101449_010 Hb_101449_010 Hb_074506_010--Hb_101449_010 Hb_004657_060--Hb_152868_030 Hb_006700_040 Hb_006700_040 Hb_004657_060--Hb_006700_040 Hb_027760_090 Hb_027760_090 Hb_004657_060--Hb_027760_090 Hb_012760_110 Hb_012760_110 Hb_004657_060--Hb_012760_110 Hb_002291_020 Hb_002291_020 Hb_004657_060--Hb_002291_020 Hb_002552_020 Hb_002552_020 Hb_007044_100--Hb_002552_020 Hb_003910_050 Hb_003910_050 Hb_007044_100--Hb_003910_050 Hb_005917_030 Hb_005917_030 Hb_007044_100--Hb_005917_030 Hb_005695_080 Hb_005695_080 Hb_007044_100--Hb_005695_080 Hb_002235_100 Hb_002235_100 Hb_007044_100--Hb_002235_100 Hb_004502_010 Hb_004502_010 Hb_007044_100--Hb_004502_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0227484 0.535019 0.315906 0.0703966 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.461608 0.87169 0.068837 1.43082 1.07397

CAGE analysis