Hb_027760_090

Information

Type transcription factor
Description TF Family: NAC
Location Contig27760: 80137-81433
Sequence    

Annotation

kegg
ID rcu:RCOM_0837530
description NAC domain-containing protein, putative
nr
ID XP_002522466.1
description NAC domain-containing protein, putative [Ricinus communis]
swissprot
ID O49255
description NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1
trembl
ID B9S8Z7
description NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_0837530 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac transcription factor 29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29000: 80033-81395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027760_090 0.0 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
2 Hb_012760_110 0.1691391378 - - PREDICTED: methyltransferase-like protein 23 isoform X1 [Jatropha curcas]
3 Hb_004657_060 0.180089833 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
4 Hb_007919_040 0.1886153535 - - PREDICTED: protein LYK5 [Jatropha curcas]
5 Hb_007472_080 0.1912413948 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
6 Hb_000811_010 0.1922050055 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF118 [Jatropha curcas]
7 Hb_074506_010 0.2000726129 - - JHL25H03.10 [Jatropha curcas]
8 Hb_053575_020 0.2007763187 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
9 Hb_003626_040 0.2010080385 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]
10 Hb_000094_370 0.2010922666 - - -
11 Hb_000181_020 0.2052254198 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
12 Hb_000996_130 0.2079771769 - - PREDICTED: remorin-like [Populus euphratica]
13 Hb_003185_100 0.2084613325 - - hypothetical protein JCGZ_07188 [Jatropha curcas]
14 Hb_000816_020 0.2123841036 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
15 Hb_000853_060 0.2133956242 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
16 Hb_000227_330 0.2141535054 - - Acyl-CoA synthetase [Ricinus communis]
17 Hb_006096_020 0.215992132 - - Os06g0343500 [Oryza sativa Japonica Group]
18 Hb_000527_070 0.2165508394 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
19 Hb_001006_010 0.2178539458 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
20 Hb_003517_020 0.2200708934 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_027760_090 Hb_027760_090 Hb_012760_110 Hb_012760_110 Hb_027760_090--Hb_012760_110 Hb_004657_060 Hb_004657_060 Hb_027760_090--Hb_004657_060 Hb_007919_040 Hb_007919_040 Hb_027760_090--Hb_007919_040 Hb_007472_080 Hb_007472_080 Hb_027760_090--Hb_007472_080 Hb_000811_010 Hb_000811_010 Hb_027760_090--Hb_000811_010 Hb_074506_010 Hb_074506_010 Hb_027760_090--Hb_074506_010 Hb_000215_360 Hb_000215_360 Hb_012760_110--Hb_000215_360 Hb_000001_130 Hb_000001_130 Hb_012760_110--Hb_000001_130 Hb_003185_100 Hb_003185_100 Hb_012760_110--Hb_003185_100 Hb_000204_070 Hb_000204_070 Hb_012760_110--Hb_000204_070 Hb_073171_100 Hb_073171_100 Hb_012760_110--Hb_073171_100 Hb_001691_200 Hb_001691_200 Hb_012760_110--Hb_001691_200 Hb_004657_060--Hb_074506_010 Hb_152868_030 Hb_152868_030 Hb_004657_060--Hb_152868_030 Hb_006700_040 Hb_006700_040 Hb_004657_060--Hb_006700_040 Hb_004657_060--Hb_012760_110 Hb_002291_020 Hb_002291_020 Hb_004657_060--Hb_002291_020 Hb_003576_050 Hb_003576_050 Hb_007919_040--Hb_003576_050 Hb_000853_060 Hb_000853_060 Hb_007919_040--Hb_000853_060 Hb_003517_020 Hb_003517_020 Hb_007919_040--Hb_003517_020 Hb_000928_040 Hb_000928_040 Hb_007919_040--Hb_000928_040 Hb_000367_310 Hb_000367_310 Hb_007919_040--Hb_000367_310 Hb_007919_040--Hb_002291_020 Hb_001006_010 Hb_001006_010 Hb_007472_080--Hb_001006_010 Hb_007546_030 Hb_007546_030 Hb_007472_080--Hb_007546_030 Hb_000866_110 Hb_000866_110 Hb_007472_080--Hb_000866_110 Hb_005181_050 Hb_005181_050 Hb_007472_080--Hb_005181_050 Hb_001477_020 Hb_001477_020 Hb_007472_080--Hb_001477_020 Hb_000661_260 Hb_000661_260 Hb_007472_080--Hb_000661_260 Hb_006594_060 Hb_006594_060 Hb_000811_010--Hb_006594_060 Hb_082683_010 Hb_082683_010 Hb_000811_010--Hb_082683_010 Hb_002420_010 Hb_002420_010 Hb_000811_010--Hb_002420_010 Hb_000816_020 Hb_000816_020 Hb_000811_010--Hb_000816_020 Hb_000527_140 Hb_000527_140 Hb_000811_010--Hb_000527_140 Hb_000793_040 Hb_000793_040 Hb_000811_010--Hb_000793_040 Hb_074506_010--Hb_000853_060 Hb_000453_240 Hb_000453_240 Hb_074506_010--Hb_000453_240 Hb_074506_010--Hb_152868_030 Hb_011633_040 Hb_011633_040 Hb_074506_010--Hb_011633_040 Hb_101449_010 Hb_101449_010 Hb_074506_010--Hb_101449_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.118405 2.84849 0.512338 1.09524 0.0723831 0.9765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.477203 1.19433 0.379747 5.32318 2.67492

CAGE analysis