Hb_005539_270

Information

Type transcription factor
Description TF Family: LOB
Location Contig5539: 203881-204668
Sequence    

Annotation

kegg
ID rcu:RCOM_0245570
description LOB domain-containing protein, putative
nr
ID XP_002534416.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9M2J7
description LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1
trembl
ID B9T847
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0245570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_270 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_005155_040 0.2275389574 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
3 Hb_007218_160 0.253498403 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
4 Hb_006829_010 0.261722464 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_004586_400 0.2654332804 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_001086_010 0.2670963698 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
7 Hb_005779_040 0.281581934 - - -
8 Hb_043768_010 0.2917383091 - - PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
9 Hb_001621_010 0.3031945313 - - PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
10 Hb_007802_020 0.3064661022 - - PREDICTED: receptor-like protein 12 [Eucalyptus grandis]
11 Hb_000331_520 0.3072152307 - - Esterase precursor, putative [Ricinus communis]
12 Hb_000866_390 0.3079289714 - - PREDICTED: O-glucosyltransferase rumi homolog [Jatropha curcas]
13 Hb_062785_010 0.3116568298 - - Organic cation transporter, putative [Ricinus communis]
14 Hb_000996_130 0.3119636123 - - PREDICTED: remorin-like [Populus euphratica]
15 Hb_013749_060 0.3153566818 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
16 Hb_000811_010 0.3217718751 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF118 [Jatropha curcas]
17 Hb_001901_030 0.3227051356 - - -
18 Hb_111985_040 0.3243314763 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
19 Hb_000203_210 0.3251410228 - - PREDICTED: uncharacterized protein LOC105040619 isoform X3 [Elaeis guineensis]
20 Hb_002217_520 0.3257611626 - - PREDICTED: probable protein phosphatase 2C 42 isoform X3 [Populus euphratica]

Gene co-expression network

sample Hb_005539_270 Hb_005539_270 Hb_005155_040 Hb_005155_040 Hb_005539_270--Hb_005155_040 Hb_007218_160 Hb_007218_160 Hb_005539_270--Hb_007218_160 Hb_006829_010 Hb_006829_010 Hb_005539_270--Hb_006829_010 Hb_004586_400 Hb_004586_400 Hb_005539_270--Hb_004586_400 Hb_001086_010 Hb_001086_010 Hb_005539_270--Hb_001086_010 Hb_005779_040 Hb_005779_040 Hb_005539_270--Hb_005779_040 Hb_005155_040--Hb_001086_010 Hb_005155_040--Hb_006829_010 Hb_005155_040--Hb_004586_400 Hb_002122_050 Hb_002122_050 Hb_005155_040--Hb_002122_050 Hb_000574_250 Hb_000574_250 Hb_005155_040--Hb_000574_250 Hb_000684_050 Hb_000684_050 Hb_007218_160--Hb_000684_050 Hb_004837_150 Hb_004837_150 Hb_007218_160--Hb_004837_150 Hb_001123_150 Hb_001123_150 Hb_007218_160--Hb_001123_150 Hb_006816_480 Hb_006816_480 Hb_007218_160--Hb_006816_480 Hb_001230_030 Hb_001230_030 Hb_007218_160--Hb_001230_030 Hb_000331_510 Hb_000331_510 Hb_007218_160--Hb_000331_510 Hb_032823_010 Hb_032823_010 Hb_006829_010--Hb_032823_010 Hb_002821_020 Hb_002821_020 Hb_006829_010--Hb_002821_020 Hb_006829_010--Hb_004586_400 Hb_000163_300 Hb_000163_300 Hb_006829_010--Hb_000163_300 Hb_002173_060 Hb_002173_060 Hb_004586_400--Hb_002173_060 Hb_001515_050 Hb_001515_050 Hb_004586_400--Hb_001515_050 Hb_005183_200 Hb_005183_200 Hb_004586_400--Hb_005183_200 Hb_004586_400--Hb_032823_010 Hb_000720_210 Hb_000720_210 Hb_004586_400--Hb_000720_210 Hb_043768_010 Hb_043768_010 Hb_004586_400--Hb_043768_010 Hb_121441_010 Hb_121441_010 Hb_001086_010--Hb_121441_010 Hb_001086_010--Hb_002122_050 Hb_059780_010 Hb_059780_010 Hb_001086_010--Hb_059780_010 Hb_000675_040 Hb_000675_040 Hb_001086_010--Hb_000675_040 Hb_000982_120 Hb_000982_120 Hb_001086_010--Hb_000982_120 Hb_044724_010 Hb_044724_010 Hb_005779_040--Hb_044724_010 Hb_002774_090 Hb_002774_090 Hb_005779_040--Hb_002774_090 Hb_000589_220 Hb_000589_220 Hb_005779_040--Hb_000589_220 Hb_003894_100 Hb_003894_100 Hb_005779_040--Hb_003894_100 Hb_000679_240 Hb_000679_240 Hb_005779_040--Hb_000679_240 Hb_067034_030 Hb_067034_030 Hb_005779_040--Hb_067034_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.276906 0 0.131474 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.168162 0.0660964 0 0.242336 0.260539

CAGE analysis