Hb_001086_010

Information

Type -
Description -
Location Contig1086: 3303-7334
Sequence    

Annotation

kegg
ID vvi:100246093
description uncharacterized LOC100246093
nr
ID XP_010660145.1
description PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7TXG2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0081g00780 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001086_010 0.0 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
2 Hb_121441_010 0.1896177533 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_005155_040 0.1919062186 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
4 Hb_002122_050 0.2022186507 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_059780_010 0.2034488969 - - PREDICTED: uncharacterized protein LOC104885482, partial [Beta vulgaris subsp. vulgaris]
6 Hb_000675_040 0.2080585493 - - hypothetical protein OsI_02937 [Oryza sativa Indica Group]
7 Hb_000982_120 0.2185312131 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
8 Hb_170878_060 0.2246327223 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
9 Hb_145211_010 0.2262585525 - - hypothetical protein M569_05648, partial [Genlisea aurea]
10 Hb_038833_010 0.2348525054 - - polyprotein [Ananas comosus]
11 Hb_127507_010 0.238168937 - - PREDICTED: uncharacterized protein LOC104814513 [Tarenaya hassleriana]
12 Hb_001607_070 0.2385753654 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
13 Hb_003450_010 0.2387267645 - - -
14 Hb_020805_190 0.2393421541 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
15 Hb_007676_060 0.2398643222 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
16 Hb_000155_040 0.2404161906 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
17 Hb_131320_010 0.241382357 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
18 Hb_060658_010 0.2430775469 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
19 Hb_000120_880 0.2442063723 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
20 Hb_001277_380 0.245950663 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_001086_010 Hb_001086_010 Hb_121441_010 Hb_121441_010 Hb_001086_010--Hb_121441_010 Hb_005155_040 Hb_005155_040 Hb_001086_010--Hb_005155_040 Hb_002122_050 Hb_002122_050 Hb_001086_010--Hb_002122_050 Hb_059780_010 Hb_059780_010 Hb_001086_010--Hb_059780_010 Hb_000675_040 Hb_000675_040 Hb_001086_010--Hb_000675_040 Hb_000982_120 Hb_000982_120 Hb_001086_010--Hb_000982_120 Hb_121441_010--Hb_059780_010 Hb_000149_090 Hb_000149_090 Hb_121441_010--Hb_000149_090 Hb_121441_010--Hb_000982_120 Hb_121441_010--Hb_000675_040 Hb_145211_010 Hb_145211_010 Hb_121441_010--Hb_145211_010 Hb_002566_010 Hb_002566_010 Hb_121441_010--Hb_002566_010 Hb_005539_270 Hb_005539_270 Hb_005155_040--Hb_005539_270 Hb_006829_010 Hb_006829_010 Hb_005155_040--Hb_006829_010 Hb_004586_400 Hb_004586_400 Hb_005155_040--Hb_004586_400 Hb_005155_040--Hb_002122_050 Hb_000574_250 Hb_000574_250 Hb_005155_040--Hb_000574_250 Hb_002122_050--Hb_000675_040 Hb_002122_050--Hb_145211_010 Hb_002122_050--Hb_059780_010 Hb_009230_020 Hb_009230_020 Hb_002122_050--Hb_009230_020 Hb_007676_060 Hb_007676_060 Hb_002122_050--Hb_007676_060 Hb_131320_010 Hb_131320_010 Hb_002122_050--Hb_131320_010 Hb_059780_010--Hb_145211_010 Hb_059780_010--Hb_000675_040 Hb_059780_010--Hb_002566_010 Hb_059780_010--Hb_000982_120 Hb_031931_030 Hb_031931_030 Hb_059780_010--Hb_031931_030 Hb_000675_040--Hb_145211_010 Hb_000675_040--Hb_131320_010 Hb_000675_040--Hb_007676_060 Hb_000982_120--Hb_002566_010 Hb_000982_120--Hb_031931_030 Hb_002900_040 Hb_002900_040 Hb_000982_120--Hb_002900_040 Hb_000982_120--Hb_145211_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.21758 0 3.65156 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.920201 0.180733 0 6.61205 5.87832

CAGE analysis