Hb_005155_040

Information

Type -
Description -
Location Contig5155: 33431-36496
Sequence    

Annotation

kegg
ID csv:101218085
description uncharacterized LOC101218085
nr
ID XP_011659859.1
description PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A5C8K0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001808 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005155_040 0.0 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
2 Hb_001086_010 0.1919062186 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
3 Hb_005539_270 0.2275389574 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_006829_010 0.2722574041 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_004586_400 0.272894662 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_002122_050 0.2830729748 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_000574_250 0.292164345 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
8 Hb_060658_010 0.2928555043 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
9 Hb_121441_010 0.2966708359 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_032823_010 0.3008757332 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000189_220 0.3022127138 - - -
12 Hb_000644_040 0.3038694937 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_009157 [Vitis vinifera]
13 Hb_000675_040 0.3042213227 - - hypothetical protein OsI_02937 [Oryza sativa Indica Group]
14 Hb_059780_010 0.3062103331 - - PREDICTED: uncharacterized protein LOC104885482, partial [Beta vulgaris subsp. vulgaris]
15 Hb_112203_010 0.3064281318 - - -
16 Hb_145211_010 0.3104910654 - - hypothetical protein M569_05648, partial [Genlisea aurea]
17 Hb_064482_010 0.3128586076 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_131320_010 0.3151548424 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
19 Hb_043768_010 0.316597637 - - PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
20 Hb_002997_050 0.3183732779 - - PREDICTED: receptor-like protein 12 isoform X4 [Populus euphratica]

Gene co-expression network

sample Hb_005155_040 Hb_005155_040 Hb_001086_010 Hb_001086_010 Hb_005155_040--Hb_001086_010 Hb_005539_270 Hb_005539_270 Hb_005155_040--Hb_005539_270 Hb_006829_010 Hb_006829_010 Hb_005155_040--Hb_006829_010 Hb_004586_400 Hb_004586_400 Hb_005155_040--Hb_004586_400 Hb_002122_050 Hb_002122_050 Hb_005155_040--Hb_002122_050 Hb_000574_250 Hb_000574_250 Hb_005155_040--Hb_000574_250 Hb_121441_010 Hb_121441_010 Hb_001086_010--Hb_121441_010 Hb_001086_010--Hb_002122_050 Hb_059780_010 Hb_059780_010 Hb_001086_010--Hb_059780_010 Hb_000675_040 Hb_000675_040 Hb_001086_010--Hb_000675_040 Hb_000982_120 Hb_000982_120 Hb_001086_010--Hb_000982_120 Hb_007218_160 Hb_007218_160 Hb_005539_270--Hb_007218_160 Hb_005539_270--Hb_006829_010 Hb_005539_270--Hb_004586_400 Hb_005539_270--Hb_001086_010 Hb_005779_040 Hb_005779_040 Hb_005539_270--Hb_005779_040 Hb_032823_010 Hb_032823_010 Hb_006829_010--Hb_032823_010 Hb_002821_020 Hb_002821_020 Hb_006829_010--Hb_002821_020 Hb_006829_010--Hb_004586_400 Hb_000163_300 Hb_000163_300 Hb_006829_010--Hb_000163_300 Hb_002173_060 Hb_002173_060 Hb_004586_400--Hb_002173_060 Hb_001515_050 Hb_001515_050 Hb_004586_400--Hb_001515_050 Hb_005183_200 Hb_005183_200 Hb_004586_400--Hb_005183_200 Hb_004586_400--Hb_032823_010 Hb_000720_210 Hb_000720_210 Hb_004586_400--Hb_000720_210 Hb_043768_010 Hb_043768_010 Hb_004586_400--Hb_043768_010 Hb_002122_050--Hb_000675_040 Hb_145211_010 Hb_145211_010 Hb_002122_050--Hb_145211_010 Hb_002122_050--Hb_059780_010 Hb_009230_020 Hb_009230_020 Hb_002122_050--Hb_009230_020 Hb_007676_060 Hb_007676_060 Hb_002122_050--Hb_007676_060 Hb_131320_010 Hb_131320_010 Hb_002122_050--Hb_131320_010 Hb_033594_100 Hb_033594_100 Hb_000574_250--Hb_033594_100 Hb_005288_060 Hb_005288_060 Hb_000574_250--Hb_005288_060 Hb_000453_240 Hb_000453_240 Hb_000574_250--Hb_000453_240 Hb_060658_010 Hb_060658_010 Hb_000574_250--Hb_060658_010 Hb_001040_150 Hb_001040_150 Hb_000574_250--Hb_001040_150 Hb_006700_040 Hb_006700_040 Hb_000574_250--Hb_006700_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0223761 0 0.017528 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.025624 0 0 0.0562114 0.0424545

CAGE analysis