Hb_010728_010

Information

Type -
Description -
Location Contig10728: 254-1218
Sequence    

Annotation

kegg
ID pda:103696607
description uncharacterized LOC103696607
nr
ID XP_008776509.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID U5CUI2
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010728_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
2 Hb_002035_060 0.2402882841 - - -
3 Hb_000039_070 0.2443468813 transcription factor TF Family: MYB MYB21, putative [Theobroma cacao]
4 Hb_001279_160 0.2522720933 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008153_020 0.2536235936 - - -
6 Hb_004953_020 0.2567966583 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
7 Hb_000412_030 0.2621274917 - - glycosyl hydrolase family 35 family protein [Populus trichocarpa]
8 Hb_000286_240 0.2626763245 - - -
9 Hb_075888_010 0.2637136036 - - PREDICTED: 25S rRNA (cytosine-C(5))-methyltransferase nop2-like [Solanum lycopersicum]
10 Hb_000976_070 0.2700801443 - - gulonolactone oxidase, putative [Ricinus communis]
11 Hb_003992_250 0.2774196579 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]
12 Hb_000149_070 0.2837488819 - - PREDICTED: uncharacterized protein At5g39570 isoform X1 [Jatropha curcas]
13 Hb_006466_020 0.2861499939 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
14 Hb_062904_010 0.2945564525 - - hypothetical protein RCOM_0725500 [Ricinus communis]
15 Hb_003878_040 0.3059530758 - - -
16 Hb_149181_020 0.3098154808 - - -
17 Hb_018264_010 0.3101394907 - - PREDICTED: uncharacterized protein LOC105630996 [Jatropha curcas]
18 Hb_001422_040 0.3104739349 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
19 Hb_001205_020 0.3118455914 - - -
20 Hb_000390_260 0.3163050051 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]

Gene co-expression network

sample Hb_010728_010 Hb_010728_010 Hb_002035_060 Hb_002035_060 Hb_010728_010--Hb_002035_060 Hb_000039_070 Hb_000039_070 Hb_010728_010--Hb_000039_070 Hb_001279_160 Hb_001279_160 Hb_010728_010--Hb_001279_160 Hb_008153_020 Hb_008153_020 Hb_010728_010--Hb_008153_020 Hb_004953_020 Hb_004953_020 Hb_010728_010--Hb_004953_020 Hb_000412_030 Hb_000412_030 Hb_010728_010--Hb_000412_030 Hb_002035_060--Hb_008153_020 Hb_002035_060--Hb_004953_020 Hb_000286_240 Hb_000286_240 Hb_002035_060--Hb_000286_240 Hb_002035_060--Hb_001279_160 Hb_003878_040 Hb_003878_040 Hb_002035_060--Hb_003878_040 Hb_149181_020 Hb_149181_020 Hb_002035_060--Hb_149181_020 Hb_000039_070--Hb_000412_030 Hb_012652_020 Hb_012652_020 Hb_000039_070--Hb_012652_020 Hb_006446_070 Hb_006446_070 Hb_000039_070--Hb_006446_070 Hb_000614_340 Hb_000614_340 Hb_000039_070--Hb_000614_340 Hb_001114_290 Hb_001114_290 Hb_000039_070--Hb_001114_290 Hb_005747_040 Hb_005747_040 Hb_000039_070--Hb_005747_040 Hb_001279_160--Hb_008153_020 Hb_001279_160--Hb_004953_020 Hb_004162_240 Hb_004162_240 Hb_001279_160--Hb_004162_240 Hb_001279_160--Hb_000286_240 Hb_008153_020--Hb_004953_020 Hb_008153_020--Hb_000286_240 Hb_008153_020--Hb_003878_040 Hb_008153_020--Hb_149181_020 Hb_018264_010 Hb_018264_010 Hb_008153_020--Hb_018264_010 Hb_004953_020--Hb_000286_240 Hb_004953_020--Hb_003878_040 Hb_004953_020--Hb_149181_020 Hb_004953_020--Hb_018264_010 Hb_062904_010 Hb_062904_010 Hb_000412_030--Hb_062904_010 Hb_000412_030--Hb_012652_020 Hb_000412_030--Hb_006446_070 Hb_000412_030--Hb_000614_340 Hb_000010_120 Hb_000010_120 Hb_000412_030--Hb_000010_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0250517 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0571537 0 0 0.144963 0

CAGE analysis