Hb_002035_060

Information

Type -
Description -
Location Contig2035: 75866-76360
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0051245
description regulatory protein npr3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002035_060 0.0 - - -
2 Hb_008153_020 0.0683260483 - - -
3 Hb_004953_020 0.0778891296 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
4 Hb_000286_240 0.0937064681 - - -
5 Hb_001279_160 0.0979980529 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003878_040 0.1792026623 - - -
7 Hb_149181_020 0.1855660683 - - -
8 Hb_018264_010 0.1860943913 - - PREDICTED: uncharacterized protein LOC105630996 [Jatropha curcas]
9 Hb_001422_040 0.1866388691 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
10 Hb_036609_010 0.2101722172 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
11 Hb_005109_030 0.2221385373 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
12 Hb_004162_240 0.2351332068 transcription factor TF Family: C2H2 C2H2 and C2HC zinc fingers superfamily protein, putative [Theobroma cacao]
13 Hb_010728_010 0.2402882841 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
14 Hb_000212_220 0.2509136213 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
15 Hb_006973_030 0.2529524314 - - -
16 Hb_006775_010 0.2544550586 transcription factor TF Family: M-type AGAMOUS [Populus yunnanensis]
17 Hb_000069_680 0.2668397047 - - -
18 Hb_019093_010 0.2695462655 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
19 Hb_007416_130 0.3018130413 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
20 Hb_000011_430 0.3211271924 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002035_060 Hb_002035_060 Hb_008153_020 Hb_008153_020 Hb_002035_060--Hb_008153_020 Hb_004953_020 Hb_004953_020 Hb_002035_060--Hb_004953_020 Hb_000286_240 Hb_000286_240 Hb_002035_060--Hb_000286_240 Hb_001279_160 Hb_001279_160 Hb_002035_060--Hb_001279_160 Hb_003878_040 Hb_003878_040 Hb_002035_060--Hb_003878_040 Hb_149181_020 Hb_149181_020 Hb_002035_060--Hb_149181_020 Hb_008153_020--Hb_004953_020 Hb_008153_020--Hb_000286_240 Hb_008153_020--Hb_003878_040 Hb_008153_020--Hb_149181_020 Hb_018264_010 Hb_018264_010 Hb_008153_020--Hb_018264_010 Hb_004953_020--Hb_000286_240 Hb_004953_020--Hb_003878_040 Hb_004953_020--Hb_149181_020 Hb_004953_020--Hb_018264_010 Hb_000286_240--Hb_003878_040 Hb_000286_240--Hb_149181_020 Hb_000286_240--Hb_018264_010 Hb_001422_040 Hb_001422_040 Hb_000286_240--Hb_001422_040 Hb_001279_160--Hb_008153_020 Hb_001279_160--Hb_004953_020 Hb_004162_240 Hb_004162_240 Hb_001279_160--Hb_004162_240 Hb_001279_160--Hb_000286_240 Hb_010728_010 Hb_010728_010 Hb_001279_160--Hb_010728_010 Hb_003878_040--Hb_149181_020 Hb_003878_040--Hb_018264_010 Hb_003878_040--Hb_001422_040 Hb_036609_010 Hb_036609_010 Hb_003878_040--Hb_036609_010 Hb_005109_030 Hb_005109_030 Hb_003878_040--Hb_005109_030 Hb_000212_220 Hb_000212_220 Hb_003878_040--Hb_000212_220 Hb_149181_020--Hb_018264_010 Hb_149181_020--Hb_001422_040 Hb_149181_020--Hb_036609_010 Hb_149181_020--Hb_005109_030 Hb_149181_020--Hb_000212_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.168407 0 0 0.390824 0

CAGE analysis