Hb_005109_030

Information

Type -
Description -
Location Contig5109: 36753-50469
Sequence    

Annotation

kegg
ID pop:POPTR_0016s04430g
description POPTRDRAFT_667366; hypothetical protein
nr
ID XP_012087779.1
description PREDICTED: metal tolerance protein C2 [Jatropha curcas]
swissprot
ID Q6ICY4
description Metal tolerance protein C2 OS=Arabidopsis thaliana GN=MTPC2 PE=2 SV=1
trembl
ID A0A067JKX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25547 PE=4 SV=1
Gene Ontology
ID GO:0044765
description metal tolerance protein c2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005109_030 0.0 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
2 Hb_036609_010 0.0121651118 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
3 Hb_000212_220 0.0293439085 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
4 Hb_006775_010 0.0329643184 transcription factor TF Family: M-type AGAMOUS [Populus yunnanensis]
5 Hb_001422_040 0.036025401 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
6 Hb_018264_010 0.0365764414 - - PREDICTED: uncharacterized protein LOC105630996 [Jatropha curcas]
7 Hb_149181_020 0.0371110892 - - -
8 Hb_003878_040 0.0435473248 - - -
9 Hb_000069_680 0.0456408206 - - -
10 Hb_019093_010 0.0484144358 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
11 Hb_000286_240 0.1294148584 - - -
12 Hb_004953_020 0.1451733088 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
13 Hb_004208_110 0.1497485622 - - -
14 Hb_007122_030 0.1498649949 - - -
15 Hb_086639_060 0.1520242233 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
16 Hb_008153_020 0.1546805645 - - -
17 Hb_136367_010 0.1585036698 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
18 Hb_000232_050 0.1669478051 - - -
19 Hb_000513_010 0.1728208948 - - -
20 Hb_032107_010 0.1757584287 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_005109_030 Hb_005109_030 Hb_036609_010 Hb_036609_010 Hb_005109_030--Hb_036609_010 Hb_000212_220 Hb_000212_220 Hb_005109_030--Hb_000212_220 Hb_006775_010 Hb_006775_010 Hb_005109_030--Hb_006775_010 Hb_001422_040 Hb_001422_040 Hb_005109_030--Hb_001422_040 Hb_018264_010 Hb_018264_010 Hb_005109_030--Hb_018264_010 Hb_149181_020 Hb_149181_020 Hb_005109_030--Hb_149181_020 Hb_036609_010--Hb_001422_040 Hb_036609_010--Hb_018264_010 Hb_036609_010--Hb_149181_020 Hb_003878_040 Hb_003878_040 Hb_036609_010--Hb_003878_040 Hb_036609_010--Hb_000212_220 Hb_000212_220--Hb_006775_010 Hb_000069_680 Hb_000069_680 Hb_000212_220--Hb_000069_680 Hb_019093_010 Hb_019093_010 Hb_000212_220--Hb_019093_010 Hb_000212_220--Hb_001422_040 Hb_006775_010--Hb_000069_680 Hb_006775_010--Hb_019093_010 Hb_006775_010--Hb_036609_010 Hb_006775_010--Hb_001422_040 Hb_001422_040--Hb_018264_010 Hb_001422_040--Hb_149181_020 Hb_001422_040--Hb_003878_040 Hb_018264_010--Hb_149181_020 Hb_018264_010--Hb_003878_040 Hb_018264_010--Hb_000212_220 Hb_149181_020--Hb_003878_040 Hb_149181_020--Hb_000212_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.100229 0 0 0.0792361 0

CAGE analysis