Hb_019093_010

Information

Type -
Description -
Location Contig19093: 734-2628
Sequence    

Annotation

kegg
ID tcc:TCM_045983
description Gag protease polyprotein-like protein
nr
ID XP_012441885.1
description PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID S1S3V9
description Gag protease polyprotein-like protein OS=Theobroma cacao GN=TCM_045983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019093_010 0.0 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
2 Hb_000069_680 0.0027759003 - - -
3 Hb_006775_010 0.015459242 transcription factor TF Family: M-type AGAMOUS [Populus yunnanensis]
4 Hb_000212_220 0.0190805323 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
5 Hb_005109_030 0.0484144358 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
6 Hb_036609_010 0.0605666519 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
7 Hb_001422_040 0.0843871601 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
8 Hb_018264_010 0.0849370579 - - PREDICTED: uncharacterized protein LOC105630996 [Jatropha curcas]
9 Hb_149181_020 0.0854705874 - - -
10 Hb_003878_040 0.0918926215 - - -
11 Hb_004208_110 0.1016295348 - - -
12 Hb_007122_030 0.1017465659 - - -
13 Hb_086639_060 0.1039170109 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
14 Hb_136367_010 0.1104314758 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
15 Hb_000232_050 0.1189243624 - - -
16 Hb_000513_010 0.1248334827 - - -
17 Hb_032107_010 0.1277897032 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
18 Hb_032252_040 0.128236596 - - -
19 Hb_011457_010 0.1321723778 - - nucleolar protein nop56, putative [Ricinus communis]
20 Hb_110798_010 0.1335296705 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]

Gene co-expression network

sample Hb_019093_010 Hb_019093_010 Hb_000069_680 Hb_000069_680 Hb_019093_010--Hb_000069_680 Hb_006775_010 Hb_006775_010 Hb_019093_010--Hb_006775_010 Hb_000212_220 Hb_000212_220 Hb_019093_010--Hb_000212_220 Hb_005109_030 Hb_005109_030 Hb_019093_010--Hb_005109_030 Hb_036609_010 Hb_036609_010 Hb_019093_010--Hb_036609_010 Hb_001422_040 Hb_001422_040 Hb_019093_010--Hb_001422_040 Hb_000069_680--Hb_006775_010 Hb_000069_680--Hb_000212_220 Hb_000069_680--Hb_005109_030 Hb_000069_680--Hb_036609_010 Hb_000069_680--Hb_001422_040 Hb_006775_010--Hb_000212_220 Hb_006775_010--Hb_005109_030 Hb_006775_010--Hb_036609_010 Hb_006775_010--Hb_001422_040 Hb_000212_220--Hb_005109_030 Hb_000212_220--Hb_036609_010 Hb_000212_220--Hb_001422_040 Hb_005109_030--Hb_036609_010 Hb_005109_030--Hb_001422_040 Hb_018264_010 Hb_018264_010 Hb_005109_030--Hb_018264_010 Hb_149181_020 Hb_149181_020 Hb_005109_030--Hb_149181_020 Hb_036609_010--Hb_001422_040 Hb_036609_010--Hb_018264_010 Hb_036609_010--Hb_149181_020 Hb_003878_040 Hb_003878_040 Hb_036609_010--Hb_003878_040 Hb_001422_040--Hb_018264_010 Hb_001422_040--Hb_149181_020 Hb_001422_040--Hb_003878_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0535761 0 0 0.0335943 0

CAGE analysis