Hb_000212_220

Information

Type transcription factor
Description TF Family: M-type
Location Contig212: 244564-245561
Sequence    

Annotation

kegg
ID rcu:RCOM_1077600
description mads box protein, putative
nr
ID XP_002514809.1
description mads box protein, putative [Ricinus communis]
swissprot
ID Q7X9H9
description Agamous-like MADS-box protein AGL93 OS=Arabidopsis thaliana GN=AGL93 PE=2 SV=1
trembl
ID B9RM40
description Mads box protein, putative OS=Ricinus communis GN=RCOM_1077600 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads box

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_220 0.0 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
2 Hb_006775_010 0.0036216924 transcription factor TF Family: M-type AGAMOUS [Populus yunnanensis]
3 Hb_000069_680 0.0163049597 - - -
4 Hb_019093_010 0.0190805323 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
5 Hb_005109_030 0.0293439085 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
6 Hb_036609_010 0.041503708 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
7 Hb_001422_040 0.0653447621 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
8 Hb_018264_010 0.0658952219 - - PREDICTED: uncharacterized protein LOC105630996 [Jatropha curcas]
9 Hb_149181_020 0.0664293004 - - -
10 Hb_003878_040 0.0728582326 - - -
11 Hb_004208_110 0.1206139268 - - -
12 Hb_007122_030 0.1207307442 - - -
13 Hb_086639_060 0.1228971756 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
14 Hb_136367_010 0.1293990512 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
15 Hb_000232_050 0.1378742805 - - -
16 Hb_000513_010 0.1437702664 - - -
17 Hb_032107_010 0.1467196499 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
18 Hb_032252_040 0.1471654936 - - -
19 Hb_011457_010 0.1510918575 - - nucleolar protein nop56, putative [Ricinus communis]
20 Hb_110798_010 0.1524458276 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]

Gene co-expression network

sample Hb_000212_220 Hb_000212_220 Hb_006775_010 Hb_006775_010 Hb_000212_220--Hb_006775_010 Hb_000069_680 Hb_000069_680 Hb_000212_220--Hb_000069_680 Hb_019093_010 Hb_019093_010 Hb_000212_220--Hb_019093_010 Hb_005109_030 Hb_005109_030 Hb_000212_220--Hb_005109_030 Hb_036609_010 Hb_036609_010 Hb_000212_220--Hb_036609_010 Hb_001422_040 Hb_001422_040 Hb_000212_220--Hb_001422_040 Hb_006775_010--Hb_000069_680 Hb_006775_010--Hb_019093_010 Hb_006775_010--Hb_005109_030 Hb_006775_010--Hb_036609_010 Hb_006775_010--Hb_001422_040 Hb_000069_680--Hb_019093_010 Hb_000069_680--Hb_005109_030 Hb_000069_680--Hb_036609_010 Hb_000069_680--Hb_001422_040 Hb_019093_010--Hb_005109_030 Hb_019093_010--Hb_036609_010 Hb_019093_010--Hb_001422_040 Hb_005109_030--Hb_036609_010 Hb_005109_030--Hb_001422_040 Hb_018264_010 Hb_018264_010 Hb_005109_030--Hb_018264_010 Hb_149181_020 Hb_149181_020 Hb_005109_030--Hb_149181_020 Hb_036609_010--Hb_001422_040 Hb_036609_010--Hb_018264_010 Hb_036609_010--Hb_149181_020 Hb_003878_040 Hb_003878_040 Hb_036609_010--Hb_003878_040 Hb_001422_040--Hb_018264_010 Hb_001422_040--Hb_149181_020 Hb_001422_040--Hb_003878_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.237866 0 0 0.163503 0

CAGE analysis