Hb_003878_040

Information

Type -
Description -
Location Contig3878: 48969-52722
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003878_040 0.0 - - -
2 Hb_149181_020 0.0064398637 - - -
3 Hb_018264_010 0.0069747565 - - PREDICTED: uncharacterized protein LOC105630996 [Jatropha curcas]
4 Hb_001422_040 0.0075260405 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
5 Hb_036609_010 0.0313880385 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
6 Hb_005109_030 0.0435473248 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
7 Hb_000212_220 0.0728582326 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
8 Hb_006775_010 0.0764726844 transcription factor TF Family: M-type AGAMOUS [Populus yunnanensis]
9 Hb_000286_240 0.0860357363 - - -
10 Hb_000069_680 0.0891249959 - - -
11 Hb_019093_010 0.0918926215 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
12 Hb_004953_020 0.101849641 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
13 Hb_008153_020 0.1113941597 - - -
14 Hb_002035_060 0.1792026623 - - -
15 Hb_004208_110 0.1928239132 - - -
16 Hb_007122_030 0.1929396616 - - -
17 Hb_086639_060 0.1950860981 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
18 Hb_136367_010 0.2015260132 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
19 Hb_000232_050 0.2099160137 - - -
20 Hb_000513_010 0.2157496728 - - -

Gene co-expression network

sample Hb_003878_040 Hb_003878_040 Hb_149181_020 Hb_149181_020 Hb_003878_040--Hb_149181_020 Hb_018264_010 Hb_018264_010 Hb_003878_040--Hb_018264_010 Hb_001422_040 Hb_001422_040 Hb_003878_040--Hb_001422_040 Hb_036609_010 Hb_036609_010 Hb_003878_040--Hb_036609_010 Hb_005109_030 Hb_005109_030 Hb_003878_040--Hb_005109_030 Hb_000212_220 Hb_000212_220 Hb_003878_040--Hb_000212_220 Hb_149181_020--Hb_018264_010 Hb_149181_020--Hb_001422_040 Hb_149181_020--Hb_036609_010 Hb_149181_020--Hb_005109_030 Hb_149181_020--Hb_000212_220 Hb_018264_010--Hb_001422_040 Hb_018264_010--Hb_036609_010 Hb_018264_010--Hb_005109_030 Hb_018264_010--Hb_000212_220 Hb_001422_040--Hb_036609_010 Hb_001422_040--Hb_005109_030 Hb_001422_040--Hb_000212_220 Hb_036609_010--Hb_005109_030 Hb_036609_010--Hb_000212_220 Hb_005109_030--Hb_000212_220 Hb_006775_010 Hb_006775_010 Hb_005109_030--Hb_006775_010 Hb_000212_220--Hb_006775_010 Hb_000069_680 Hb_000069_680 Hb_000212_220--Hb_000069_680 Hb_019093_010 Hb_019093_010 Hb_000212_220--Hb_019093_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.112089 0 0 0.108847 0

CAGE analysis