Hb_001422_040

Information

Type -
Description -
Location Contig1422: 40449-43485
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID XP_012490570.1
description PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
swissprot
ID Q5DTZ0
description Protein NYNRIN OS=Mus musculus GN=Nynrin PE=2 SV=2
trembl
ID A0A061E5E3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001422_040 0.0 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
2 Hb_018264_010 0.000551294 - - PREDICTED: uncharacterized protein LOC105630996 [Jatropha curcas]
3 Hb_149181_020 0.001086195 - - -
4 Hb_003878_040 0.0075260405 - - -
5 Hb_036609_010 0.0238639598 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
6 Hb_005109_030 0.036025401 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
7 Hb_000212_220 0.0653447621 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
8 Hb_006775_010 0.0689605801 transcription factor TF Family: M-type AGAMOUS [Populus yunnanensis]
9 Hb_000069_680 0.0816182444 - - -
10 Hb_019093_010 0.0843871601 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
11 Hb_000286_240 0.0935406894 - - -
12 Hb_004953_020 0.1093464214 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
13 Hb_008153_020 0.1188853392 - - -
14 Hb_004208_110 0.1853968009 - - -
15 Hb_007122_030 0.1855126767 - - -
16 Hb_002035_060 0.1866388691 - - -
17 Hb_086639_060 0.1876614925 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
18 Hb_136367_010 0.1941087395 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
19 Hb_000232_050 0.2025087335 - - -
20 Hb_000513_010 0.2083496411 - - -

Gene co-expression network

sample Hb_001422_040 Hb_001422_040 Hb_018264_010 Hb_018264_010 Hb_001422_040--Hb_018264_010 Hb_149181_020 Hb_149181_020 Hb_001422_040--Hb_149181_020 Hb_003878_040 Hb_003878_040 Hb_001422_040--Hb_003878_040 Hb_036609_010 Hb_036609_010 Hb_001422_040--Hb_036609_010 Hb_005109_030 Hb_005109_030 Hb_001422_040--Hb_005109_030 Hb_000212_220 Hb_000212_220 Hb_001422_040--Hb_000212_220 Hb_018264_010--Hb_149181_020 Hb_018264_010--Hb_003878_040 Hb_018264_010--Hb_036609_010 Hb_018264_010--Hb_005109_030 Hb_018264_010--Hb_000212_220 Hb_149181_020--Hb_003878_040 Hb_149181_020--Hb_036609_010 Hb_149181_020--Hb_005109_030 Hb_149181_020--Hb_000212_220 Hb_003878_040--Hb_036609_010 Hb_003878_040--Hb_005109_030 Hb_003878_040--Hb_000212_220 Hb_036609_010--Hb_005109_030 Hb_036609_010--Hb_000212_220 Hb_005109_030--Hb_000212_220 Hb_006775_010 Hb_006775_010 Hb_005109_030--Hb_006775_010 Hb_000212_220--Hb_006775_010 Hb_000069_680 Hb_000069_680 Hb_000212_220--Hb_000069_680 Hb_019093_010 Hb_019093_010 Hb_000212_220--Hb_019093_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0171617 0 0 0.0160848 0

CAGE analysis