Hb_004953_020

Information

Type -
Description -
Location Contig4953: 33670-34953
Sequence    

Annotation

kegg
ID cmo:103497647
description uncharacterized LOC103497647
nr
ID XP_009786188.1
description PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M5Y283
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019381mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004953_020 0.0 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
2 Hb_008153_020 0.0095840018 - - -
3 Hb_000286_240 0.0158638136 - - -
4 Hb_002035_060 0.0778891296 - - -
5 Hb_003878_040 0.101849641 - - -
6 Hb_149181_020 0.1082647102 - - -
7 Hb_018264_010 0.1087974141 - - PREDICTED: uncharacterized protein LOC105630996 [Jatropha curcas]
8 Hb_001422_040 0.1093464214 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
9 Hb_036609_010 0.1330896944 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
10 Hb_005109_030 0.1451733088 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
11 Hb_000212_220 0.174259455 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
12 Hb_001279_160 0.1752344212 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006775_010 0.1778420122 transcription factor TF Family: M-type AGAMOUS [Populus yunnanensis]
14 Hb_000069_680 0.1903753719 - - -
15 Hb_019093_010 0.1931154541 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
16 Hb_006973_030 0.2419041022 - - -
17 Hb_010728_010 0.2567966583 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
18 Hb_004162_240 0.2904272145 transcription factor TF Family: C2H2 C2H2 and C2HC zinc fingers superfamily protein, putative [Theobroma cacao]
19 Hb_004208_110 0.2926494588 - - -
20 Hb_007122_030 0.2927631404 - - -

Gene co-expression network

sample Hb_004953_020 Hb_004953_020 Hb_008153_020 Hb_008153_020 Hb_004953_020--Hb_008153_020 Hb_000286_240 Hb_000286_240 Hb_004953_020--Hb_000286_240 Hb_002035_060 Hb_002035_060 Hb_004953_020--Hb_002035_060 Hb_003878_040 Hb_003878_040 Hb_004953_020--Hb_003878_040 Hb_149181_020 Hb_149181_020 Hb_004953_020--Hb_149181_020 Hb_018264_010 Hb_018264_010 Hb_004953_020--Hb_018264_010 Hb_008153_020--Hb_000286_240 Hb_008153_020--Hb_002035_060 Hb_008153_020--Hb_003878_040 Hb_008153_020--Hb_149181_020 Hb_008153_020--Hb_018264_010 Hb_000286_240--Hb_003878_040 Hb_000286_240--Hb_149181_020 Hb_000286_240--Hb_018264_010 Hb_001422_040 Hb_001422_040 Hb_000286_240--Hb_001422_040 Hb_002035_060--Hb_000286_240 Hb_001279_160 Hb_001279_160 Hb_002035_060--Hb_001279_160 Hb_002035_060--Hb_003878_040 Hb_002035_060--Hb_149181_020 Hb_003878_040--Hb_149181_020 Hb_003878_040--Hb_018264_010 Hb_003878_040--Hb_001422_040 Hb_036609_010 Hb_036609_010 Hb_003878_040--Hb_036609_010 Hb_005109_030 Hb_005109_030 Hb_003878_040--Hb_005109_030 Hb_000212_220 Hb_000212_220 Hb_003878_040--Hb_000212_220 Hb_149181_020--Hb_018264_010 Hb_149181_020--Hb_001422_040 Hb_149181_020--Hb_036609_010 Hb_149181_020--Hb_005109_030 Hb_149181_020--Hb_000212_220 Hb_018264_010--Hb_001422_040 Hb_018264_010--Hb_036609_010 Hb_018264_010--Hb_005109_030 Hb_018264_010--Hb_000212_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0410617 0 0 0.0647065 0

CAGE analysis