Hb_001279_160

Information

Type -
Description -
Location Contig1279: 162641-163071
Sequence    

Annotation

kegg
ID rcu:RCOM_0530940
description hypothetical protein
nr
ID XP_002526943.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SLS4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0530940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08595: 163753-166459
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001279_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002035_060 0.0979980529 - - -
3 Hb_008153_020 0.1657760024 - - -
4 Hb_004953_020 0.1752344212 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
5 Hb_004162_240 0.1858754914 transcription factor TF Family: C2H2 C2H2 and C2HC zinc fingers superfamily protein, putative [Theobroma cacao]
6 Hb_000286_240 0.1908652463 - - -
7 Hb_010728_010 0.2522720933 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
8 Hb_007416_130 0.2606434845 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
9 Hb_003878_040 0.2750946211 - - -
10 Hb_111189_010 0.2807505275 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
11 Hb_149181_020 0.2813478349 - - -
12 Hb_018264_010 0.2818669165 - - PREDICTED: uncharacterized protein LOC105630996 [Jatropha curcas]
13 Hb_001422_040 0.2824018553 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
14 Hb_006973_030 0.2948911652 - - -
15 Hb_012707_050 0.2992792473 - - hypothetical protein RCOM_1341590 [Ricinus communis]
16 Hb_000011_430 0.3022094016 - - zinc finger protein, putative [Ricinus communis]
17 Hb_036609_010 0.3055087023 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
18 Hb_003992_250 0.3059941334 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]
19 Hb_001190_060 0.3102524922 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
20 Hb_000039_070 0.3114600283 transcription factor TF Family: MYB MYB21, putative [Theobroma cacao]

Gene co-expression network

sample Hb_001279_160 Hb_001279_160 Hb_002035_060 Hb_002035_060 Hb_001279_160--Hb_002035_060 Hb_008153_020 Hb_008153_020 Hb_001279_160--Hb_008153_020 Hb_004953_020 Hb_004953_020 Hb_001279_160--Hb_004953_020 Hb_004162_240 Hb_004162_240 Hb_001279_160--Hb_004162_240 Hb_000286_240 Hb_000286_240 Hb_001279_160--Hb_000286_240 Hb_010728_010 Hb_010728_010 Hb_001279_160--Hb_010728_010 Hb_002035_060--Hb_008153_020 Hb_002035_060--Hb_004953_020 Hb_002035_060--Hb_000286_240 Hb_003878_040 Hb_003878_040 Hb_002035_060--Hb_003878_040 Hb_149181_020 Hb_149181_020 Hb_002035_060--Hb_149181_020 Hb_008153_020--Hb_004953_020 Hb_008153_020--Hb_000286_240 Hb_008153_020--Hb_003878_040 Hb_008153_020--Hb_149181_020 Hb_018264_010 Hb_018264_010 Hb_008153_020--Hb_018264_010 Hb_004953_020--Hb_000286_240 Hb_004953_020--Hb_003878_040 Hb_004953_020--Hb_149181_020 Hb_004953_020--Hb_018264_010 Hb_004162_240--Hb_002035_060 Hb_004162_240--Hb_008153_020 Hb_004162_240--Hb_004953_020 Hb_000213_130 Hb_000213_130 Hb_004162_240--Hb_000213_130 Hb_007416_130 Hb_007416_130 Hb_004162_240--Hb_007416_130 Hb_000286_240--Hb_003878_040 Hb_000286_240--Hb_149181_020 Hb_000286_240--Hb_018264_010 Hb_001422_040 Hb_001422_040 Hb_000286_240--Hb_001422_040 Hb_010728_010--Hb_002035_060 Hb_000039_070 Hb_000039_070 Hb_010728_010--Hb_000039_070 Hb_010728_010--Hb_008153_020 Hb_010728_010--Hb_004953_020 Hb_000412_030 Hb_000412_030 Hb_010728_010--Hb_000412_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.324615 0 0 1.28789 0

CAGE analysis