Hb_004162_240

Information

Type transcription factor
Description TF Family: C2H2
Location Contig4162: 203340-204548
Sequence    

Annotation

kegg
ID tcc:TCM_041585
description C2H2 and C2HC zinc fingers superfamily protein, putative
nr
ID XP_007016060.1
description C2H2 and C2HC zinc fingers superfamily protein, putative [Theobroma cacao]
swissprot
ID Q9C8N5
description Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1
trembl
ID A0A061GZV2
description C2H2 and C2HC zinc fingers superfamily protein, putative OS=Theobroma cacao GN=TCM_041585 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein sensitive to proton rhizotoxicity 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_240 0.0 transcription factor TF Family: C2H2 C2H2 and C2HC zinc fingers superfamily protein, putative [Theobroma cacao]
2 Hb_001279_160 0.1858754914 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002035_060 0.2351332068 - - -
4 Hb_008153_020 0.2831783053 - - -
5 Hb_004953_020 0.2904272145 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
6 Hb_000213_130 0.2935480136 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
7 Hb_007416_130 0.3007943524 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
8 Hb_000286_240 0.3026310094 - - -
9 Hb_012707_050 0.3039454971 - - hypothetical protein RCOM_1341590 [Ricinus communis]
10 Hb_005085_010 0.3084483857 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
11 Hb_111189_010 0.3095183082 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
12 Hb_000692_270 0.3128972351 - - PREDICTED: ornithine decarboxylase-like [Jatropha curcas]
13 Hb_000002_450 0.3186759729 - - hypothetical protein JCGZ_02285 [Jatropha curcas]
14 Hb_001190_060 0.3187086772 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
15 Hb_010728_010 0.3229579334 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
16 Hb_010647_010 0.3231464155 - - PREDICTED: protein NP24-like [Eucalyptus grandis]
17 Hb_003992_250 0.3264131357 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]
18 Hb_000008_130 0.3268949 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
19 Hb_000013_040 0.3268949 - - -
20 Hb_000013_070 0.3268949 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_004162_240 Hb_004162_240 Hb_001279_160 Hb_001279_160 Hb_004162_240--Hb_001279_160 Hb_002035_060 Hb_002035_060 Hb_004162_240--Hb_002035_060 Hb_008153_020 Hb_008153_020 Hb_004162_240--Hb_008153_020 Hb_004953_020 Hb_004953_020 Hb_004162_240--Hb_004953_020 Hb_000213_130 Hb_000213_130 Hb_004162_240--Hb_000213_130 Hb_007416_130 Hb_007416_130 Hb_004162_240--Hb_007416_130 Hb_001279_160--Hb_002035_060 Hb_001279_160--Hb_008153_020 Hb_001279_160--Hb_004953_020 Hb_000286_240 Hb_000286_240 Hb_001279_160--Hb_000286_240 Hb_010728_010 Hb_010728_010 Hb_001279_160--Hb_010728_010 Hb_002035_060--Hb_008153_020 Hb_002035_060--Hb_004953_020 Hb_002035_060--Hb_000286_240 Hb_003878_040 Hb_003878_040 Hb_002035_060--Hb_003878_040 Hb_149181_020 Hb_149181_020 Hb_002035_060--Hb_149181_020 Hb_008153_020--Hb_004953_020 Hb_008153_020--Hb_000286_240 Hb_008153_020--Hb_003878_040 Hb_008153_020--Hb_149181_020 Hb_018264_010 Hb_018264_010 Hb_008153_020--Hb_018264_010 Hb_004953_020--Hb_000286_240 Hb_004953_020--Hb_003878_040 Hb_004953_020--Hb_149181_020 Hb_004953_020--Hb_018264_010 Hb_012506_080 Hb_012506_080 Hb_000213_130--Hb_012506_080 Hb_004267_050 Hb_004267_050 Hb_000213_130--Hb_004267_050 Hb_022250_050 Hb_022250_050 Hb_000213_130--Hb_022250_050 Hb_001140_330 Hb_001140_330 Hb_000213_130--Hb_001140_330 Hb_005120_010 Hb_005120_010 Hb_000213_130--Hb_005120_010 Hb_001040_190 Hb_001040_190 Hb_000213_130--Hb_001040_190 Hb_007897_040 Hb_007897_040 Hb_007416_130--Hb_007897_040 Hb_111189_010 Hb_111189_010 Hb_007416_130--Hb_111189_010 Hb_000140_240 Hb_000140_240 Hb_007416_130--Hb_000140_240 Hb_000402_220 Hb_000402_220 Hb_007416_130--Hb_000402_220 Hb_000772_070 Hb_000772_070 Hb_007416_130--Hb_000772_070 Hb_000069_050 Hb_000069_050 Hb_007416_130--Hb_000069_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0353027 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0804192 0 0 0.468744 0

CAGE analysis