Hb_000140_240

Information

Type transcription factor
Description TF Family: WRKY
Location Contig140: 244345-245279
Sequence    

Annotation

kegg
ID pop:POPTR_0014s08640g
description POPTRDRAFT_774432; hypothetical protein
nr
ID XP_002320160.2
description hypothetical protein POPTR_0014s08640g [Populus trichocarpa]
swissprot
ID Q8GY11
description Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1
trembl
ID B9I8Q5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s08640g PE=4 SV=2
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 43

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000140_240 0.0 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s08640g [Populus trichocarpa]
2 Hb_004217_010 0.1047979788 - - putative wall-associated kinase family protein [Populus trichocarpa]
3 Hb_014387_040 0.1509156833 - - PREDICTED: uncharacterized protein LOC105636953 [Jatropha curcas]
4 Hb_001571_010 0.1656589277 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
5 Hb_000069_050 0.1726888715 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
6 Hb_000038_090 0.1937478145 transcription factor TF Family: NAC hypothetical protein POPTR_0002s05820g [Populus trichocarpa]
7 Hb_003121_020 0.1940021516 - - secretory peroxidase PX3 [Manihot esculenta]
8 Hb_034585_020 0.1945120317 - - -
9 Hb_012136_010 0.1992742382 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
10 Hb_005066_060 0.1992908992 - - FAD-binding Berberine family protein, putative [Theobroma cacao]
11 Hb_006533_010 0.2006839286 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
12 Hb_005563_020 0.200823503 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
13 Hb_010839_070 0.2030442434 - - uncharacterized protein LOC100810725 [Glycine max]
14 Hb_119748_010 0.203754532 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
15 Hb_123560_010 0.2047410185 - - hypothetical protein JCGZ_12463 [Jatropha curcas]
16 Hb_019708_010 0.2082155902 - - -
17 Hb_000631_130 0.2087603593 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
18 Hb_000352_080 0.2090304845 - - PREDICTED: lipid transfer-like protein VAS [Jatropha curcas]
19 Hb_038135_010 0.2094002874 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
20 Hb_078903_010 0.2095302456 - - Osmotin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000140_240 Hb_000140_240 Hb_004217_010 Hb_004217_010 Hb_000140_240--Hb_004217_010 Hb_014387_040 Hb_014387_040 Hb_000140_240--Hb_014387_040 Hb_001571_010 Hb_001571_010 Hb_000140_240--Hb_001571_010 Hb_000069_050 Hb_000069_050 Hb_000140_240--Hb_000069_050 Hb_000038_090 Hb_000038_090 Hb_000140_240--Hb_000038_090 Hb_003121_020 Hb_003121_020 Hb_000140_240--Hb_003121_020 Hb_004217_010--Hb_001571_010 Hb_071381_010 Hb_071381_010 Hb_004217_010--Hb_071381_010 Hb_000352_080 Hb_000352_080 Hb_004217_010--Hb_000352_080 Hb_003891_060 Hb_003891_060 Hb_004217_010--Hb_003891_060 Hb_000405_040 Hb_000405_040 Hb_004217_010--Hb_000405_040 Hb_129204_050 Hb_129204_050 Hb_014387_040--Hb_129204_050 Hb_000560_050 Hb_000560_050 Hb_014387_040--Hb_000560_050 Hb_038135_010 Hb_038135_010 Hb_014387_040--Hb_038135_010 Hb_019708_010 Hb_019708_010 Hb_014387_040--Hb_019708_010 Hb_014387_040--Hb_003121_020 Hb_010839_070 Hb_010839_070 Hb_001571_010--Hb_010839_070 Hb_001571_010--Hb_071381_010 Hb_117464_010 Hb_117464_010 Hb_001571_010--Hb_117464_010 Hb_008160_020 Hb_008160_020 Hb_001571_010--Hb_008160_020 Hb_000640_270 Hb_000640_270 Hb_001571_010--Hb_000640_270 Hb_001571_010--Hb_003121_020 Hb_000836_400 Hb_000836_400 Hb_000069_050--Hb_000836_400 Hb_000631_130 Hb_000631_130 Hb_000069_050--Hb_000631_130 Hb_000069_050--Hb_000038_090 Hb_007044_070 Hb_007044_070 Hb_000069_050--Hb_007044_070 Hb_010697_030 Hb_010697_030 Hb_000069_050--Hb_010697_030 Hb_008775_050 Hb_008775_050 Hb_000069_050--Hb_008775_050 Hb_000038_090--Hb_000631_130 Hb_001473_100 Hb_001473_100 Hb_000038_090--Hb_001473_100 Hb_000933_200 Hb_000933_200 Hb_000038_090--Hb_000933_200 Hb_000327_300 Hb_000327_300 Hb_000038_090--Hb_000327_300 Hb_007747_030 Hb_007747_030 Hb_000038_090--Hb_007747_030 Hb_000407_110 Hb_000407_110 Hb_000038_090--Hb_000407_110 Hb_084495_010 Hb_084495_010 Hb_003121_020--Hb_084495_010 Hb_099198_010 Hb_099198_010 Hb_003121_020--Hb_099198_010 Hb_014113_010 Hb_014113_010 Hb_003121_020--Hb_014113_010 Hb_003121_020--Hb_010839_070 Hb_003121_020--Hb_000640_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.107774 0.327847 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0865856 0 0 1.99832 0

CAGE analysis