Hb_075888_010

Information

Type -
Description -
Location Contig75888: 651-1985
Sequence    

Annotation

kegg
ID sly:101247282
description 25S rRNA (cytosine-C(5))-methyltransferase nop2-like
nr
ID XP_004232776.1
description PREDICTED: 25S rRNA (cytosine-C(5))-methyltransferase nop2-like [Solanum lycopersicum]
swissprot
ID Q8LEM8
description 60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1
trembl
ID M1C191
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400022346 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 25s rrna (cytosine-c )-methyltransferase nop2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075888_010 0.0 - - PREDICTED: 25S rRNA (cytosine-C(5))-methyltransferase nop2-like [Solanum lycopersicum]
2 Hb_010728_010 0.2637136036 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
3 Hb_010490_030 0.3122800718 - - -
4 Hb_000976_070 0.3131161255 - - gulonolactone oxidase, putative [Ricinus communis]
5 Hb_001205_020 0.3194803932 - - -
6 Hb_002821_020 0.3384654612 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter C family member 4 [Vitis vinifera]
7 Hb_014175_010 0.3424360952 - - Uncharacterized protein TCM_033221 [Theobroma cacao]
8 Hb_000149_070 0.3459893161 - - PREDICTED: uncharacterized protein At5g39570 isoform X1 [Jatropha curcas]
9 Hb_000163_300 0.3539331714 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
10 Hb_006829_010 0.3682828692 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_001112_020 0.371165556 - - PREDICTED: uncharacterized protein LOC103717724, partial [Phoenix dactylifera]
12 Hb_006466_020 0.3714356066 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
13 Hb_062904_010 0.3737784065 - - hypothetical protein RCOM_0725500 [Ricinus communis]
14 Hb_004195_180 0.3767499212 - - unnamed protein product [Coffea canephora]
15 Hb_006198_150 0.3819605344 - - -
16 Hb_002301_390 0.3836369364 - - -
17 Hb_000836_510 0.385050778 - - conserved hypothetical protein [Ricinus communis]
18 Hb_183209_010 0.3888649389 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
19 Hb_000614_340 0.3931843922 - - Salutaridinol 7-O-acetyltransferase, putative [Ricinus communis]
20 Hb_006446_070 0.3952823073 - - Zinc-binding dehydrogenase family protein [Theobroma cacao]

Gene co-expression network

sample Hb_075888_010 Hb_075888_010 Hb_010728_010 Hb_010728_010 Hb_075888_010--Hb_010728_010 Hb_010490_030 Hb_010490_030 Hb_075888_010--Hb_010490_030 Hb_000976_070 Hb_000976_070 Hb_075888_010--Hb_000976_070 Hb_001205_020 Hb_001205_020 Hb_075888_010--Hb_001205_020 Hb_002821_020 Hb_002821_020 Hb_075888_010--Hb_002821_020 Hb_014175_010 Hb_014175_010 Hb_075888_010--Hb_014175_010 Hb_002035_060 Hb_002035_060 Hb_010728_010--Hb_002035_060 Hb_000039_070 Hb_000039_070 Hb_010728_010--Hb_000039_070 Hb_001279_160 Hb_001279_160 Hb_010728_010--Hb_001279_160 Hb_008153_020 Hb_008153_020 Hb_010728_010--Hb_008153_020 Hb_004953_020 Hb_004953_020 Hb_010728_010--Hb_004953_020 Hb_000412_030 Hb_000412_030 Hb_010728_010--Hb_000412_030 Hb_074197_060 Hb_074197_060 Hb_010490_030--Hb_074197_060 Hb_005779_050 Hb_005779_050 Hb_010490_030--Hb_005779_050 Hb_007105_010 Hb_007105_010 Hb_010490_030--Hb_007105_010 Hb_004102_120 Hb_004102_120 Hb_010490_030--Hb_004102_120 Hb_062827_010 Hb_062827_010 Hb_010490_030--Hb_062827_010 Hb_003861_130 Hb_003861_130 Hb_010490_030--Hb_003861_130 Hb_000614_340 Hb_000614_340 Hb_000976_070--Hb_000614_340 Hb_000976_070--Hb_000039_070 Hb_003992_250 Hb_003992_250 Hb_000976_070--Hb_003992_250 Hb_006446_070 Hb_006446_070 Hb_000976_070--Hb_006446_070 Hb_062904_010 Hb_062904_010 Hb_000976_070--Hb_062904_010 Hb_000976_070--Hb_000412_030 Hb_001205_020--Hb_006446_070 Hb_007729_010 Hb_007729_010 Hb_001205_020--Hb_007729_010 Hb_001205_020--Hb_000614_340 Hb_000836_510 Hb_000836_510 Hb_001205_020--Hb_000836_510 Hb_006198_150 Hb_006198_150 Hb_001205_020--Hb_006198_150 Hb_000856_350 Hb_000856_350 Hb_001205_020--Hb_000856_350 Hb_000163_300 Hb_000163_300 Hb_002821_020--Hb_000163_300 Hb_006829_010 Hb_006829_010 Hb_002821_020--Hb_006829_010 Hb_000390_260 Hb_000390_260 Hb_002821_020--Hb_000390_260 Hb_012098_170 Hb_012098_170 Hb_002821_020--Hb_012098_170 Hb_000213_090 Hb_000213_090 Hb_002821_020--Hb_000213_090 Hb_017987_040 Hb_017987_040 Hb_002821_020--Hb_017987_040 Hb_001112_020 Hb_001112_020 Hb_014175_010--Hb_001112_020 Hb_014175_010--Hb_006829_010 Hb_073146_010 Hb_073146_010 Hb_014175_010--Hb_073146_010 Hb_014175_010--Hb_010728_010 Hb_000149_070 Hb_000149_070 Hb_014175_010--Hb_000149_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.263446 0 0 0.0617751 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.287284 0 0 0.42389 0

CAGE analysis