Hb_014175_010

Information

Type -
Description -
Location Contig14175: 6058-9094
Sequence    

Annotation

kegg
ID tcc:TCM_033221
description hypothetical protein
nr
ID XP_007022529.1
description Uncharacterized protein TCM_033221 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FHV2
description Uncharacterized protein OS=Theobroma cacao GN=TCM_033221 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014175_010 0.0 - - Uncharacterized protein TCM_033221 [Theobroma cacao]
2 Hb_001112_020 0.09420358 - - PREDICTED: uncharacterized protein LOC103717724, partial [Phoenix dactylifera]
3 Hb_006829_010 0.28467465 - - receptor protein kinase, putative [Ricinus communis]
4 Hb_073146_010 0.3014496734 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
5 Hb_010728_010 0.3274180083 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
6 Hb_075888_010 0.3424360952 - - PREDICTED: 25S rRNA (cytosine-C(5))-methyltransferase nop2-like [Solanum lycopersicum]
7 Hb_000149_070 0.3479276366 - - PREDICTED: uncharacterized protein At5g39570 isoform X1 [Jatropha curcas]
8 Hb_001828_030 0.3526897112 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
9 Hb_079459_010 0.3597511812 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006466_020 0.3630524666 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
11 Hb_053162_010 0.3662568169 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
12 Hb_010490_030 0.3698239327 - - -
13 Hb_183209_010 0.371190673 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
14 Hb_032823_010 0.3765685213 - - conserved hypothetical protein [Ricinus communis]
15 Hb_114893_050 0.3824261364 - - Uncharacterized protein isoform 3 [Theobroma cacao]
16 Hb_002043_110 0.3834803111 - - hypothetical protein POPTR_0001s19500g [Populus trichocarpa]
17 Hb_000504_110 0.3876704189 - - F-box/LRR-repeat protein, putative [Ricinus communis]
18 Hb_074197_060 0.3878280799 - - PREDICTED: probable protein S-acyltransferase 14 isoform X1 [Populus euphratica]
19 Hb_149181_020 0.3888915609 - - -
20 Hb_018264_010 0.3888927205 - - PREDICTED: uncharacterized protein LOC105630996 [Jatropha curcas]

Gene co-expression network

sample Hb_014175_010 Hb_014175_010 Hb_001112_020 Hb_001112_020 Hb_014175_010--Hb_001112_020 Hb_006829_010 Hb_006829_010 Hb_014175_010--Hb_006829_010 Hb_073146_010 Hb_073146_010 Hb_014175_010--Hb_073146_010 Hb_010728_010 Hb_010728_010 Hb_014175_010--Hb_010728_010 Hb_075888_010 Hb_075888_010 Hb_014175_010--Hb_075888_010 Hb_000149_070 Hb_000149_070 Hb_014175_010--Hb_000149_070 Hb_001112_020--Hb_073146_010 Hb_001112_020--Hb_006829_010 Hb_010490_030 Hb_010490_030 Hb_001112_020--Hb_010490_030 Hb_114893_050 Hb_114893_050 Hb_001112_020--Hb_114893_050 Hb_002719_070 Hb_002719_070 Hb_001112_020--Hb_002719_070 Hb_032823_010 Hb_032823_010 Hb_006829_010--Hb_032823_010 Hb_002821_020 Hb_002821_020 Hb_006829_010--Hb_002821_020 Hb_005539_270 Hb_005539_270 Hb_006829_010--Hb_005539_270 Hb_004586_400 Hb_004586_400 Hb_006829_010--Hb_004586_400 Hb_000163_300 Hb_000163_300 Hb_006829_010--Hb_000163_300 Hb_005155_040 Hb_005155_040 Hb_006829_010--Hb_005155_040 Hb_183209_010 Hb_183209_010 Hb_073146_010--Hb_183209_010 Hb_006198_140 Hb_006198_140 Hb_073146_010--Hb_006198_140 Hb_002774_090 Hb_002774_090 Hb_073146_010--Hb_002774_090 Hb_001318_130 Hb_001318_130 Hb_073146_010--Hb_001318_130 Hb_002035_060 Hb_002035_060 Hb_010728_010--Hb_002035_060 Hb_000039_070 Hb_000039_070 Hb_010728_010--Hb_000039_070 Hb_001279_160 Hb_001279_160 Hb_010728_010--Hb_001279_160 Hb_008153_020 Hb_008153_020 Hb_010728_010--Hb_008153_020 Hb_004953_020 Hb_004953_020 Hb_010728_010--Hb_004953_020 Hb_000412_030 Hb_000412_030 Hb_010728_010--Hb_000412_030 Hb_075888_010--Hb_010728_010 Hb_075888_010--Hb_010490_030 Hb_000976_070 Hb_000976_070 Hb_075888_010--Hb_000976_070 Hb_001205_020 Hb_001205_020 Hb_075888_010--Hb_001205_020 Hb_075888_010--Hb_002821_020 Hb_000917_150 Hb_000917_150 Hb_000149_070--Hb_000917_150 Hb_006466_020 Hb_006466_020 Hb_000149_070--Hb_006466_020 Hb_010931_010 Hb_010931_010 Hb_000149_070--Hb_010931_010 Hb_001329_040 Hb_001329_040 Hb_000149_070--Hb_001329_040 Hb_106204_010 Hb_106204_010 Hb_000149_070--Hb_106204_010 Hb_059162_010 Hb_059162_010 Hb_000149_070--Hb_059162_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0147387 0 0.0146549 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.04053 0 0 0.0383137 0

CAGE analysis