Hb_106204_010

Information

Type -
Description -
Location Contig106204: 4704-5312
Sequence    

Annotation

kegg
ID rcu:RCOM_0714620
description hypothetical protein
nr
ID XP_002529719.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SUQ0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0714620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106204_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006153_200 0.1470827718 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao]
3 Hb_001195_440 0.1574628622 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
4 Hb_003462_150 0.1627669469 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]
5 Hb_004544_080 0.1629745638 - - lectin protein kinase [Populus trichocarpa]
6 Hb_002999_090 0.1636415817 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000141_230 0.1661852405 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
8 Hb_000521_340 0.1676094364 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
9 Hb_001901_010 0.1702351602 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
10 Hb_000608_080 0.1742853914 - - hypothetical protein JCGZ_22216 [Jatropha curcas]
11 Hb_002556_020 0.1754920481 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
12 Hb_002475_020 0.1775531079 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
13 Hb_001971_070 0.1814934235 - - unnamed protein product [Coffea canephora]
14 Hb_001769_090 0.183832245 - - PREDICTED: uncharacterized protein LOC105630842 [Jatropha curcas]
15 Hb_001218_020 0.1848288678 transcription factor TF Family: MYB hypothetical protein POPTR_0005s17080g [Populus trichocarpa]
16 Hb_000302_060 0.1861475069 - - unnamed protein product [Vitis vinifera]
17 Hb_000948_070 0.1918854542 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
18 Hb_164162_020 0.1921902275 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
19 Hb_031340_030 0.1936100246 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
20 Hb_166813_010 0.1949862409 - - hypothetical protein JCGZ_24970 [Jatropha curcas]

Gene co-expression network

sample Hb_106204_010 Hb_106204_010 Hb_006153_200 Hb_006153_200 Hb_106204_010--Hb_006153_200 Hb_001195_440 Hb_001195_440 Hb_106204_010--Hb_001195_440 Hb_003462_150 Hb_003462_150 Hb_106204_010--Hb_003462_150 Hb_004544_080 Hb_004544_080 Hb_106204_010--Hb_004544_080 Hb_002999_090 Hb_002999_090 Hb_106204_010--Hb_002999_090 Hb_000141_230 Hb_000141_230 Hb_106204_010--Hb_000141_230 Hb_006153_200--Hb_001195_440 Hb_001901_010 Hb_001901_010 Hb_006153_200--Hb_001901_010 Hb_006153_200--Hb_002999_090 Hb_045992_010 Hb_045992_010 Hb_006153_200--Hb_045992_010 Hb_001218_020 Hb_001218_020 Hb_006153_200--Hb_001218_020 Hb_006153_200--Hb_003462_150 Hb_001195_440--Hb_001901_010 Hb_164162_020 Hb_164162_020 Hb_001195_440--Hb_164162_020 Hb_001971_070 Hb_001971_070 Hb_001195_440--Hb_001971_070 Hb_001195_440--Hb_004544_080 Hb_006538_070 Hb_006538_070 Hb_001195_440--Hb_006538_070 Hb_003462_150--Hb_004544_080 Hb_003462_150--Hb_000141_230 Hb_000608_080 Hb_000608_080 Hb_003462_150--Hb_000608_080 Hb_003462_150--Hb_002999_090 Hb_002556_020 Hb_002556_020 Hb_003462_150--Hb_002556_020 Hb_002475_020 Hb_002475_020 Hb_003462_150--Hb_002475_020 Hb_004544_080--Hb_000141_230 Hb_004544_080--Hb_000608_080 Hb_004544_080--Hb_002999_090 Hb_004544_080--Hb_002556_020 Hb_004544_080--Hb_002475_020 Hb_002999_090--Hb_002556_020 Hb_002999_090--Hb_000141_230 Hb_002999_090--Hb_001901_010 Hb_002999_090--Hb_002475_020 Hb_000141_230--Hb_000608_080 Hb_000302_060 Hb_000302_060 Hb_000141_230--Hb_000302_060 Hb_000141_230--Hb_002556_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.369331 0 0.383831 0.0428311 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0987712 0 0 1.90842 0

CAGE analysis