Hb_114893_050

Information

Type -
Description -
Location Contig114893: 45237-45958
Sequence    

Annotation

kegg
ID tcc:TCM_017110
description Uncharacterized protein isoform 1
nr
ID XP_007031794.1
description Uncharacterized protein isoform 3 [Theobroma cacao]
swissprot
ID Q949R9
description Mitochondrial pyruvate carrier 1 OS=Arabidopsis thaliana GN=MPC1 PE=3 SV=1
trembl
ID A0A061ECM8
description Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_017110 PE=4 SV=1
Gene Ontology
ID GO:0005743
description mitochondrial pyruvate carrier 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114893_050 0.0 - - Uncharacterized protein isoform 3 [Theobroma cacao]
2 Hb_003918_020 0.3261873224 - - -
3 Hb_009986_010 0.3297621037 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_000066_160 0.3416292297 - - -
5 Hb_001112_020 0.3555248895 - - PREDICTED: uncharacterized protein LOC103717724, partial [Phoenix dactylifera]
6 Hb_002094_050 0.3699944029 - - PREDICTED: organic cation/carnitine transporter 4-like, partial [Eucalyptus grandis]
7 Hb_026747_020 0.3793044871 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_062785_010 0.3797898717 - - Organic cation transporter, putative [Ricinus communis]
9 Hb_014175_010 0.3824261364 - - Uncharacterized protein TCM_033221 [Theobroma cacao]
10 Hb_003994_170 0.3842054572 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
11 Hb_053162_010 0.3909418414 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
12 Hb_013272_010 0.3957633257 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_000883_040 0.3980068314 - - -
14 Hb_005048_040 0.402781602 - - PREDICTED: endonuclease 1 [Jatropha curcas]
15 Hb_097730_010 0.4051368365 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
16 Hb_000307_120 0.4074035341 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
17 Hb_000227_050 0.4077335258 - - -
18 Hb_004903_010 0.4146220071 - - -
19 Hb_027380_200 0.4196380794 transcription factor TF Family: ARF PREDICTED: auxin response factor 6 isoform X2 [Jatropha curcas]
20 Hb_000661_070 0.4214340561 - - -

Gene co-expression network

sample Hb_114893_050 Hb_114893_050 Hb_003918_020 Hb_003918_020 Hb_114893_050--Hb_003918_020 Hb_009986_010 Hb_009986_010 Hb_114893_050--Hb_009986_010 Hb_000066_160 Hb_000066_160 Hb_114893_050--Hb_000066_160 Hb_001112_020 Hb_001112_020 Hb_114893_050--Hb_001112_020 Hb_002094_050 Hb_002094_050 Hb_114893_050--Hb_002094_050 Hb_026747_020 Hb_026747_020 Hb_114893_050--Hb_026747_020 Hb_006629_010 Hb_006629_010 Hb_003918_020--Hb_006629_010 Hb_001741_120 Hb_001741_120 Hb_003918_020--Hb_001741_120 Hb_001159_150 Hb_001159_150 Hb_003918_020--Hb_001159_150 Hb_002477_050 Hb_002477_050 Hb_003918_020--Hb_002477_050 Hb_000365_050 Hb_000365_050 Hb_003918_020--Hb_000365_050 Hb_011794_080 Hb_011794_080 Hb_003918_020--Hb_011794_080 Hb_002094_070 Hb_002094_070 Hb_009986_010--Hb_002094_070 Hb_062785_010 Hb_062785_010 Hb_009986_010--Hb_062785_010 Hb_007218_160 Hb_007218_160 Hb_009986_010--Hb_007218_160 Hb_001115_020 Hb_001115_020 Hb_009986_010--Hb_001115_020 Hb_000684_050 Hb_000684_050 Hb_009986_010--Hb_000684_050 Hb_000243_150 Hb_000243_150 Hb_009986_010--Hb_000243_150 Hb_000227_050 Hb_000227_050 Hb_000066_160--Hb_000227_050 Hb_080104_010 Hb_080104_010 Hb_000066_160--Hb_080104_010 Hb_133702_040 Hb_133702_040 Hb_000066_160--Hb_133702_040 Hb_000066_160--Hb_003918_020 Hb_011644_010 Hb_011644_010 Hb_000066_160--Hb_011644_010 Hb_000661_070 Hb_000661_070 Hb_000066_160--Hb_000661_070 Hb_014175_010 Hb_014175_010 Hb_001112_020--Hb_014175_010 Hb_073146_010 Hb_073146_010 Hb_001112_020--Hb_073146_010 Hb_006829_010 Hb_006829_010 Hb_001112_020--Hb_006829_010 Hb_010490_030 Hb_010490_030 Hb_001112_020--Hb_010490_030 Hb_002719_070 Hb_002719_070 Hb_001112_020--Hb_002719_070 Hb_012218_020 Hb_012218_020 Hb_002094_050--Hb_012218_020 Hb_008879_010 Hb_008879_010 Hb_002094_050--Hb_008879_010 Hb_005615_060 Hb_005615_060 Hb_002094_050--Hb_005615_060 Hb_010121_020 Hb_010121_020 Hb_002094_050--Hb_010121_020 Hb_002094_050--Hb_000066_160 Hb_003994_170 Hb_003994_170 Hb_026747_020--Hb_003994_170 Hb_001232_120 Hb_001232_120 Hb_026747_020--Hb_001232_120 Hb_009393_170 Hb_009393_170 Hb_026747_020--Hb_009393_170 Hb_002043_110 Hb_002043_110 Hb_026747_020--Hb_002043_110 Hb_000454_060 Hb_000454_060 Hb_026747_020--Hb_000454_060 Hb_000048_020 Hb_000048_020 Hb_026747_020--Hb_000048_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.489961 0 0.748174 0 0.646174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.73721 0 0 0.652092 0.386846

CAGE analysis