Hb_080104_010

Information

Type -
Description -
Location Contig80104: 64-645
Sequence    

Annotation

kegg
ID vvi:100252140
description (-)-germacrene D synthase-like
nr
ID CBI20481.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q6Q3H3
description (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1
trembl
ID F6H2I3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g04880 PE=4 SV=1
Gene Ontology
ID GO:0005737
description (-)-germacrene d synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58787: 433-553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080104_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_002168_010 0.2306038623 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
3 Hb_029142_070 0.2306389447 - - -
4 Hb_010984_040 0.2371996417 - - hypothetical protein M569_17286, partial [Genlisea aurea]
5 Hb_025288_010 0.2408507041 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
6 Hb_000125_020 0.2419561401 transcription factor TF Family: mTERF -
7 Hb_007943_200 0.2445042106 - - Uncharacterized protein isoform 2 [Theobroma cacao]
8 Hb_000603_070 0.2445329988 - - -
9 Hb_002200_050 0.246592109 - - unknown [Lotus japonicus]
10 Hb_002073_010 0.2467713113 - - -
11 Hb_000016_060 0.2468768998 - - mads box protein, putative [Ricinus communis]
12 Hb_000294_050 0.2484489531 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
13 Hb_005694_020 0.2494136222 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
14 Hb_001449_030 0.2497785126 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Jatropha curcas]
15 Hb_006153_030 0.2557272677 - - PREDICTED: probable transaldolase [Jatropha curcas]
16 Hb_002562_110 0.2565806756 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
17 Hb_002126_010 0.2589960488 - - predicted protein [Hordeum vulgare subsp. vulgare]
18 Hb_000562_060 0.2599851957 - - PREDICTED: uncharacterized protein LOC105169741 [Sesamum indicum]
19 Hb_028089_020 0.2633083956 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
20 Hb_008206_100 0.2633464358 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]

Gene co-expression network

sample Hb_080104_010 Hb_080104_010 Hb_002168_010 Hb_002168_010 Hb_080104_010--Hb_002168_010 Hb_029142_070 Hb_029142_070 Hb_080104_010--Hb_029142_070 Hb_010984_040 Hb_010984_040 Hb_080104_010--Hb_010984_040 Hb_025288_010 Hb_025288_010 Hb_080104_010--Hb_025288_010 Hb_000125_020 Hb_000125_020 Hb_080104_010--Hb_000125_020 Hb_007943_200 Hb_007943_200 Hb_080104_010--Hb_007943_200 Hb_000317_140 Hb_000317_140 Hb_002168_010--Hb_000317_140 Hb_007763_050 Hb_007763_050 Hb_002168_010--Hb_007763_050 Hb_004669_030 Hb_004669_030 Hb_002168_010--Hb_004669_030 Hb_000641_020 Hb_000641_020 Hb_002168_010--Hb_000641_020 Hb_000015_070 Hb_000015_070 Hb_002168_010--Hb_000015_070 Hb_000635_070 Hb_000635_070 Hb_002168_010--Hb_000635_070 Hb_041205_010 Hb_041205_010 Hb_029142_070--Hb_041205_010 Hb_002078_260 Hb_002078_260 Hb_029142_070--Hb_002078_260 Hb_005694_020 Hb_005694_020 Hb_029142_070--Hb_005694_020 Hb_029142_070--Hb_000641_020 Hb_132180_010 Hb_132180_010 Hb_029142_070--Hb_132180_010 Hb_007894_230 Hb_007894_230 Hb_029142_070--Hb_007894_230 Hb_004525_050 Hb_004525_050 Hb_010984_040--Hb_004525_050 Hb_100137_010 Hb_100137_010 Hb_010984_040--Hb_100137_010 Hb_006634_110 Hb_006634_110 Hb_010984_040--Hb_006634_110 Hb_009083_030 Hb_009083_030 Hb_010984_040--Hb_009083_030 Hb_048702_010 Hb_048702_010 Hb_010984_040--Hb_048702_010 Hb_121694_010 Hb_121694_010 Hb_010984_040--Hb_121694_010 Hb_025288_010--Hb_132180_010 Hb_025288_010--Hb_002078_260 Hb_011037_020 Hb_011037_020 Hb_025288_010--Hb_011037_020 Hb_025288_010--Hb_029142_070 Hb_030982_020 Hb_030982_020 Hb_025288_010--Hb_030982_020 Hb_011214_100 Hb_011214_100 Hb_025288_010--Hb_011214_100 Hb_000481_050 Hb_000481_050 Hb_000125_020--Hb_000481_050 Hb_002562_110 Hb_002562_110 Hb_000125_020--Hb_002562_110 Hb_000125_020--Hb_004669_030 Hb_000125_020--Hb_132180_010 Hb_000671_120 Hb_000671_120 Hb_000125_020--Hb_000671_120 Hb_000016_060 Hb_000016_060 Hb_000125_020--Hb_000016_060 Hb_006153_030 Hb_006153_030 Hb_007943_200--Hb_006153_030 Hb_002477_010 Hb_002477_010 Hb_007943_200--Hb_002477_010 Hb_007943_200--Hb_005694_020 Hb_143629_130 Hb_143629_130 Hb_007943_200--Hb_143629_130 Hb_148130_020 Hb_148130_020 Hb_007943_200--Hb_148130_020 Hb_002735_050 Hb_002735_050 Hb_007943_200--Hb_002735_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.1165 0.0857025 5.08005 0.217487 2.31865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04096 2.20532 0 1.32866 1.34529

CAGE analysis