Hb_002094_050

Information

Type -
Description -
Location Contig2094: 63813-64842
Sequence    

Annotation

kegg
ID egr:104431554
description organic cation/carnitine transporter 4-like
nr
ID XP_010042471.1
description PREDICTED: organic cation/carnitine transporter 4-like, partial [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059BM89
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01005 PE=4 SV=1
Gene Ontology
ID GO:0044763
description organic cation carnitine transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002094_050 0.0 - - PREDICTED: organic cation/carnitine transporter 4-like, partial [Eucalyptus grandis]
2 Hb_012218_020 0.3574623197 - - hypothetical protein JCGZ_14688 [Jatropha curcas]
3 Hb_008879_010 0.3607902642 - - Beta-ureidopropionase, putative [Ricinus communis]
4 Hb_005615_060 0.3638947938 - - PREDICTED: uncharacterized protein LOC105636752 [Jatropha curcas]
5 Hb_114893_050 0.3699944029 - - Uncharacterized protein isoform 3 [Theobroma cacao]
6 Hb_010121_020 0.3788297457 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_000066_160 0.3918116743 - - -
8 Hb_004714_020 0.4002610051 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
9 Hb_150200_010 0.402181779 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
10 Hb_004116_010 0.405510984 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_002325_080 0.4071896709 - - -
12 Hb_007192_110 0.4092538856 - - -
13 Hb_012193_020 0.4097265131 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
14 Hb_121338_010 0.4141888266 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
15 Hb_041813_020 0.4156572797 - - ATP synthase epsilon subunit [Grubbia rosmarinifolia]
16 Hb_001595_060 0.4172027144 - - hypothetical protein L484_001429 [Morus notabilis]
17 Hb_006267_050 0.4174936063 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
18 Hb_011206_030 0.4205736973 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
19 Hb_048953_010 0.4205736973 - - PREDICTED: uncharacterized protein LOC105775428 [Gossypium raimondii]
20 Hb_004532_010 0.4207570078 - - PREDICTED: uncharacterized protein LOC105800934 [Gossypium raimondii]

Gene co-expression network

sample Hb_002094_050 Hb_002094_050 Hb_012218_020 Hb_012218_020 Hb_002094_050--Hb_012218_020 Hb_008879_010 Hb_008879_010 Hb_002094_050--Hb_008879_010 Hb_005615_060 Hb_005615_060 Hb_002094_050--Hb_005615_060 Hb_114893_050 Hb_114893_050 Hb_002094_050--Hb_114893_050 Hb_010121_020 Hb_010121_020 Hb_002094_050--Hb_010121_020 Hb_000066_160 Hb_000066_160 Hb_002094_050--Hb_000066_160 Hb_002811_340 Hb_002811_340 Hb_012218_020--Hb_002811_340 Hb_033222_010 Hb_033222_010 Hb_012218_020--Hb_033222_010 Hb_005496_100 Hb_005496_100 Hb_012218_020--Hb_005496_100 Hb_012938_010 Hb_012938_010 Hb_012218_020--Hb_012938_010 Hb_000002_420 Hb_000002_420 Hb_012218_020--Hb_000002_420 Hb_000016_120 Hb_000016_120 Hb_012218_020--Hb_000016_120 Hb_002325_080 Hb_002325_080 Hb_008879_010--Hb_002325_080 Hb_041813_020 Hb_041813_020 Hb_008879_010--Hb_041813_020 Hb_001595_060 Hb_001595_060 Hb_008879_010--Hb_001595_060 Hb_006267_050 Hb_006267_050 Hb_008879_010--Hb_006267_050 Hb_011206_030 Hb_011206_030 Hb_008879_010--Hb_011206_030 Hb_048953_010 Hb_048953_010 Hb_008879_010--Hb_048953_010 Hb_065858_010 Hb_065858_010 Hb_005615_060--Hb_065858_010 Hb_001936_170 Hb_001936_170 Hb_005615_060--Hb_001936_170 Hb_000449_060 Hb_000449_060 Hb_005615_060--Hb_000449_060 Hb_015807_110 Hb_015807_110 Hb_005615_060--Hb_015807_110 Hb_031474_030 Hb_031474_030 Hb_005615_060--Hb_031474_030 Hb_011724_030 Hb_011724_030 Hb_005615_060--Hb_011724_030 Hb_003918_020 Hb_003918_020 Hb_114893_050--Hb_003918_020 Hb_009986_010 Hb_009986_010 Hb_114893_050--Hb_009986_010 Hb_114893_050--Hb_000066_160 Hb_001112_020 Hb_001112_020 Hb_114893_050--Hb_001112_020 Hb_026747_020 Hb_026747_020 Hb_114893_050--Hb_026747_020 Hb_001844_010 Hb_001844_010 Hb_010121_020--Hb_001844_010 Hb_076836_010 Hb_076836_010 Hb_010121_020--Hb_076836_010 Hb_002478_050 Hb_002478_050 Hb_010121_020--Hb_002478_050 Hb_000485_060 Hb_000485_060 Hb_010121_020--Hb_000485_060 Hb_005781_010 Hb_005781_010 Hb_010121_020--Hb_005781_010 Hb_006094_010 Hb_006094_010 Hb_010121_020--Hb_006094_010 Hb_000227_050 Hb_000227_050 Hb_000066_160--Hb_000227_050 Hb_080104_010 Hb_080104_010 Hb_000066_160--Hb_080104_010 Hb_133702_040 Hb_133702_040 Hb_000066_160--Hb_133702_040 Hb_000066_160--Hb_003918_020 Hb_011644_010 Hb_011644_010 Hb_000066_160--Hb_011644_010 Hb_000661_070 Hb_000661_070 Hb_000066_160--Hb_000661_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0780388 0 0.11227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.551335 0 0 0 0.20169

CAGE analysis