Hb_003918_020

Information

Type -
Description -
Location Contig3918: 9970-11209
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39226: 4552-11434 , PASA_asmbl_39227: 9392-9594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003918_020 0.0 - - -
2 Hb_006629_010 0.1999904025 - - Glutathione S-transferase 2 isoform 3 [Theobroma cacao]
3 Hb_001741_120 0.2103882612 - - hypothetical protein CARUB_v10011543mg, partial [Capsella rubella]
4 Hb_001159_150 0.2165525117 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_002477_050 0.225145023 - - unnamed protein product [Coffea canephora]
6 Hb_000365_050 0.2273142072 - - -
7 Hb_011794_080 0.2372434849 - - acyl-CoA thioesterase, putative [Ricinus communis]
8 Hb_165279_010 0.2456646432 - - Kiwellin, putative [Ricinus communis]
9 Hb_004709_020 0.2460550582 - - PREDICTED: putative threonine aspartase [Jatropha curcas]
10 Hb_001014_110 0.2500133993 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
11 Hb_038237_010 0.2505281649 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
12 Hb_000721_040 0.251090082 - - PREDICTED: uncharacterized protein LOC105636110 isoform X1 [Jatropha curcas]
13 Hb_005701_060 0.2511777748 - - hypothetical protein JCGZ_04513 [Jatropha curcas]
14 Hb_007943_200 0.2516710577 - - Uncharacterized protein isoform 2 [Theobroma cacao]
15 Hb_000038_080 0.2525743009 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
16 Hb_000521_270 0.2529035438 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
17 Hb_008447_030 0.2530828925 - - -
18 Hb_023732_090 0.2540354107 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_008790_020 0.2548144806 - - PREDICTED: uncharacterized protein LOC105638122 [Jatropha curcas]
20 Hb_000086_410 0.2561921992 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]

Gene co-expression network

sample Hb_003918_020 Hb_003918_020 Hb_006629_010 Hb_006629_010 Hb_003918_020--Hb_006629_010 Hb_001741_120 Hb_001741_120 Hb_003918_020--Hb_001741_120 Hb_001159_150 Hb_001159_150 Hb_003918_020--Hb_001159_150 Hb_002477_050 Hb_002477_050 Hb_003918_020--Hb_002477_050 Hb_000365_050 Hb_000365_050 Hb_003918_020--Hb_000365_050 Hb_011794_080 Hb_011794_080 Hb_003918_020--Hb_011794_080 Hb_181328_010 Hb_181328_010 Hb_006629_010--Hb_181328_010 Hb_006629_010--Hb_002477_050 Hb_002974_050 Hb_002974_050 Hb_006629_010--Hb_002974_050 Hb_000051_170 Hb_000051_170 Hb_006629_010--Hb_000051_170 Hb_000991_070 Hb_000991_070 Hb_006629_010--Hb_000991_070 Hb_000825_030 Hb_000825_030 Hb_006629_010--Hb_000825_030 Hb_012760_130 Hb_012760_130 Hb_001741_120--Hb_012760_130 Hb_004883_050 Hb_004883_050 Hb_001741_120--Hb_004883_050 Hb_007123_060 Hb_007123_060 Hb_001741_120--Hb_007123_060 Hb_001741_120--Hb_000051_170 Hb_003206_120 Hb_003206_120 Hb_001741_120--Hb_003206_120 Hb_003992_040 Hb_003992_040 Hb_001741_120--Hb_003992_040 Hb_116420_010 Hb_116420_010 Hb_001159_150--Hb_116420_010 Hb_003747_060 Hb_003747_060 Hb_001159_150--Hb_003747_060 Hb_007943_200 Hb_007943_200 Hb_001159_150--Hb_007943_200 Hb_001159_150--Hb_002477_050 Hb_001159_150--Hb_000365_050 Hb_001159_150--Hb_011794_080 Hb_000215_310 Hb_000215_310 Hb_002477_050--Hb_000215_310 Hb_143629_130 Hb_143629_130 Hb_002477_050--Hb_143629_130 Hb_099116_010 Hb_099116_010 Hb_002477_050--Hb_099116_010 Hb_001195_160 Hb_001195_160 Hb_002477_050--Hb_001195_160 Hb_004709_020 Hb_004709_020 Hb_002477_050--Hb_004709_020 Hb_000365_050--Hb_011794_080 Hb_004668_090 Hb_004668_090 Hb_000365_050--Hb_004668_090 Hb_132880_040 Hb_132880_040 Hb_000365_050--Hb_132880_040 Hb_002675_140 Hb_002675_140 Hb_000365_050--Hb_002675_140 Hb_000115_150 Hb_000115_150 Hb_000365_050--Hb_000115_150 Hb_001157_200 Hb_001157_200 Hb_000365_050--Hb_001157_200 Hb_025194_100 Hb_025194_100 Hb_011794_080--Hb_025194_100 Hb_001571_050 Hb_001571_050 Hb_011794_080--Hb_001571_050 Hb_000994_120 Hb_000994_120 Hb_011794_080--Hb_000994_120 Hb_000392_190 Hb_000392_190 Hb_011794_080--Hb_000392_190 Hb_009787_030 Hb_009787_030 Hb_011794_080--Hb_009787_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.352513 0.682874 0.293026 1.55411 0.333624 1.93665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.52297 0.440753 0 1.285 0.72527

CAGE analysis