Hb_002719_070

Information

Type -
Description -
Location Contig2719: 96305-98245
Sequence    

Annotation

kegg
ID rcu:RCOM_0814470
description gibberellin 20-oxidase, putative (EC:1.14.11.15)
nr
ID XP_002518816.1
description gibberellin 20-oxidase, putative [Ricinus communis]
swissprot
ID O49561
description Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX8 PE=1 SV=2
trembl
ID B9RY49
description Gibberellin 20-oxidase, putative OS=Ricinus communis GN=RCOM_0814470 PE=3 SV=1
Gene Ontology
ID GO:0016707
description gibberellin 2-beta-dioxygenase 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002719_070 0.0 - - gibberellin 20-oxidase, putative [Ricinus communis]
2 Hb_011609_160 0.26337615 - - Lipase, putative [Ricinus communis]
3 Hb_001189_060 0.2803702396 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
4 Hb_010490_030 0.3069295186 - - -
5 Hb_031004_010 0.3102889129 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
6 Hb_135978_010 0.3114729892 - - hypothetical protein EUGRSUZ_J026621, partial [Eucalyptus grandis]
7 Hb_004488_010 0.313083822 - - hypothetical protein CISIN_1g019168mg [Citrus sinensis]
8 Hb_073146_010 0.3170031409 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
9 Hb_001623_030 0.3193857181 - - serine/threonine protein kinase, putative [Ricinus communis]
10 Hb_007105_010 0.3234981621 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
11 Hb_005424_070 0.3260149578 - - PREDICTED: TATA-box-binding protein 1-like [Jatropha curcas]
12 Hb_003861_130 0.3314838203 - - -
13 Hb_000155_100 0.345097048 - - Protein MLO, putative [Ricinus communis]
14 Hb_001318_130 0.3469883219 - - PREDICTED: short-chain dehydrogenase reductase 3b-like [Populus euphratica]
15 Hb_002215_010 0.3495426563 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_002411_140 0.3496640567 - - PREDICTED: cytosolic sulfotransferase 15-like [Jatropha curcas]
17 Hb_004102_120 0.3500857439 - - -
18 Hb_001776_230 0.3550301526 - - PREDICTED: uncharacterized protein LOC104884260 [Beta vulgaris subsp. vulgaris]
19 Hb_001112_020 0.3561232062 - - PREDICTED: uncharacterized protein LOC103717724, partial [Phoenix dactylifera]
20 Hb_007810_130 0.3598568557 - - PREDICTED: ankyrin-1-like [Prunus mume]

Gene co-expression network

sample Hb_002719_070 Hb_002719_070 Hb_011609_160 Hb_011609_160 Hb_002719_070--Hb_011609_160 Hb_001189_060 Hb_001189_060 Hb_002719_070--Hb_001189_060 Hb_010490_030 Hb_010490_030 Hb_002719_070--Hb_010490_030 Hb_031004_010 Hb_031004_010 Hb_002719_070--Hb_031004_010 Hb_135978_010 Hb_135978_010 Hb_002719_070--Hb_135978_010 Hb_004488_010 Hb_004488_010 Hb_002719_070--Hb_004488_010 Hb_011609_160--Hb_135978_010 Hb_001623_030 Hb_001623_030 Hb_011609_160--Hb_001623_030 Hb_003142_100 Hb_003142_100 Hb_011609_160--Hb_003142_100 Hb_000656_180 Hb_000656_180 Hb_011609_160--Hb_000656_180 Hb_003861_130 Hb_003861_130 Hb_011609_160--Hb_003861_130 Hb_003018_070 Hb_003018_070 Hb_001189_060--Hb_003018_070 Hb_000186_210 Hb_000186_210 Hb_001189_060--Hb_000186_210 Hb_002063_030 Hb_002063_030 Hb_001189_060--Hb_002063_030 Hb_006907_120 Hb_006907_120 Hb_001189_060--Hb_006907_120 Hb_007105_010 Hb_007105_010 Hb_001189_060--Hb_007105_010 Hb_001902_150 Hb_001902_150 Hb_001189_060--Hb_001902_150 Hb_074197_060 Hb_074197_060 Hb_010490_030--Hb_074197_060 Hb_005779_050 Hb_005779_050 Hb_010490_030--Hb_005779_050 Hb_010490_030--Hb_007105_010 Hb_004102_120 Hb_004102_120 Hb_010490_030--Hb_004102_120 Hb_062827_010 Hb_062827_010 Hb_010490_030--Hb_062827_010 Hb_010490_030--Hb_003861_130 Hb_009683_050 Hb_009683_050 Hb_031004_010--Hb_009683_050 Hb_004310_010 Hb_004310_010 Hb_031004_010--Hb_004310_010 Hb_002215_010 Hb_002215_010 Hb_031004_010--Hb_002215_010 Hb_000272_120 Hb_000272_120 Hb_031004_010--Hb_000272_120 Hb_001341_110 Hb_001341_110 Hb_031004_010--Hb_001341_110 Hb_031004_010--Hb_000656_180 Hb_135978_010--Hb_001623_030 Hb_135978_010--Hb_003861_130 Hb_135978_010--Hb_004102_120 Hb_135978_010--Hb_062827_010 Hb_011692_030 Hb_011692_030 Hb_135978_010--Hb_011692_030 Hb_020763_020 Hb_020763_020 Hb_135978_010--Hb_020763_020 Hb_000142_020 Hb_000142_020 Hb_004488_010--Hb_000142_020 Hb_000877_090 Hb_000877_090 Hb_004488_010--Hb_000877_090 Hb_005588_020 Hb_005588_020 Hb_004488_010--Hb_005588_020 Hb_038758_010 Hb_038758_010 Hb_004488_010--Hb_038758_010 Hb_000977_160 Hb_000977_160 Hb_004488_010--Hb_000977_160 Hb_066262_020 Hb_066262_020 Hb_004488_010--Hb_066262_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.103462 0 0.0167536 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0489096 0 0 0.0154594 0

CAGE analysis