Hb_003142_100

Information

Type -
Description -
Location Contig3142: 103740-117301
Sequence    

Annotation

kegg
ID egr:104452985
description probable receptor-like protein kinase At1g67000
nr
ID XP_010065788.1
description PREDICTED: probable receptor-like protein kinase At1g67000 [Eucalyptus grandis]
swissprot
ID Q940A2
description Protein kinase and PP2C-like domain-containing protein OS=Arabidopsis thaliana GN=At2g40860/At2g40870 PE=2 SV=1
trembl
ID B9IDW2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s02040g PE=3 SV=2
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003142_100 0.0 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Eucalyptus grandis]
2 Hb_127819_010 0.1991101797 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_003053_060 0.2026977627 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
4 Hb_136886_010 0.2080479431 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_011120_020 0.2115876433 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
6 Hb_011416_020 0.2195403006 - - conserved hypothetical protein [Ricinus communis]
7 Hb_015978_030 0.2256228922 - - Zinc finger protein GIS2 [Medicago truncatula]
8 Hb_125981_010 0.2262143009 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
9 Hb_180486_010 0.2324617676 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_005588_140 0.2346773614 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002835_260 0.2353952645 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
12 Hb_047833_010 0.2369207364 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
13 Hb_090459_010 0.2397084149 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
14 Hb_000142_010 0.2397740639 - - PREDICTED: uncharacterized protein LOC105632779 [Jatropha curcas]
15 Hb_083862_010 0.2411509292 - - hypothetical protein JCGZ_17956 [Jatropha curcas]
16 Hb_003893_020 0.2431268958 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]
17 Hb_174829_040 0.2436226988 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
18 Hb_158803_020 0.2440150461 - - hypothetical protein JCGZ_12890 [Jatropha curcas]
19 Hb_107495_050 0.2459329222 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
20 Hb_000960_010 0.2460234721 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]

Gene co-expression network

sample Hb_003142_100 Hb_003142_100 Hb_127819_010 Hb_127819_010 Hb_003142_100--Hb_127819_010 Hb_003053_060 Hb_003053_060 Hb_003142_100--Hb_003053_060 Hb_136886_010 Hb_136886_010 Hb_003142_100--Hb_136886_010 Hb_011120_020 Hb_011120_020 Hb_003142_100--Hb_011120_020 Hb_011416_020 Hb_011416_020 Hb_003142_100--Hb_011416_020 Hb_015978_030 Hb_015978_030 Hb_003142_100--Hb_015978_030 Hb_000960_010 Hb_000960_010 Hb_127819_010--Hb_000960_010 Hb_127819_010--Hb_136886_010 Hb_090459_010 Hb_090459_010 Hb_127819_010--Hb_090459_010 Hb_001565_120 Hb_001565_120 Hb_127819_010--Hb_001565_120 Hb_155642_010 Hb_155642_010 Hb_127819_010--Hb_155642_010 Hb_125981_010 Hb_125981_010 Hb_127819_010--Hb_125981_010 Hb_003053_060--Hb_015978_030 Hb_000142_010 Hb_000142_010 Hb_003053_060--Hb_000142_010 Hb_174829_040 Hb_174829_040 Hb_003053_060--Hb_174829_040 Hb_004324_290 Hb_004324_290 Hb_003053_060--Hb_004324_290 Hb_002835_260 Hb_002835_260 Hb_003053_060--Hb_002835_260 Hb_003053_060--Hb_136886_010 Hb_136886_010--Hb_000960_010 Hb_000465_330 Hb_000465_330 Hb_136886_010--Hb_000465_330 Hb_000015_180 Hb_000015_180 Hb_136886_010--Hb_000015_180 Hb_136886_010--Hb_002835_260 Hb_002217_270 Hb_002217_270 Hb_136886_010--Hb_002217_270 Hb_011120_020--Hb_000015_180 Hb_000003_430 Hb_000003_430 Hb_011120_020--Hb_000003_430 Hb_011120_020--Hb_011416_020 Hb_011120_020--Hb_002835_260 Hb_002918_150 Hb_002918_150 Hb_011120_020--Hb_002918_150 Hb_000220_090 Hb_000220_090 Hb_011120_020--Hb_000220_090 Hb_011416_020--Hb_002835_260 Hb_011416_020--Hb_000142_010 Hb_011416_020--Hb_000003_430 Hb_001956_190 Hb_001956_190 Hb_011416_020--Hb_001956_190 Hb_000506_130 Hb_000506_130 Hb_011416_020--Hb_000506_130 Hb_003086_050 Hb_003086_050 Hb_015978_030--Hb_003086_050 Hb_000072_330 Hb_000072_330 Hb_015978_030--Hb_000072_330 Hb_015978_030--Hb_004324_290 Hb_013057_030 Hb_013057_030 Hb_015978_030--Hb_013057_030 Hb_003095_050 Hb_003095_050 Hb_015978_030--Hb_003095_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.815248 0.0243203 0.125469 0.0581935 0.0624519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0372618 0.0293232 0 0.00387372 0

CAGE analysis