Hb_137350_010

Information

Type -
Description -
Location Contig137350: 2-361
Sequence    

Annotation

kegg
ID pmum:103338807
description potassium channel SKOR-like
nr
ID XP_008240285.1
description PREDICTED: potassium channel SKOR-like [Prunus mume]
swissprot
ID Q653P0
description Potassium channel KOR1 OS=Oryza sativa subsp. japonica GN=Os06g0250600 PE=2 SV=1
trembl
ID A0A061FWK0
description STELAR K+ outward rectifier isoform 2 OS=Theobroma cacao GN=TCM_013007 PE=4 SV=1
Gene Ontology
ID GO:0004622
description potassium channel skor-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_137350_010 0.0 - - PREDICTED: potassium channel SKOR-like [Prunus mume]
2 Hb_000106_060 0.2120774504 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
3 Hb_000934_180 0.2202238826 - - hypothetical protein JCGZ_25237 [Jatropha curcas]
4 Hb_170861_010 0.2280842934 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
5 Hb_113945_010 0.2312354152 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
6 Hb_039096_010 0.2343610716 - - unknown [Populus trichocarpa]
7 Hb_003212_020 0.235641991 - - hypothetical protein PHAVU_009G114800g [Phaseolus vulgaris]
8 Hb_001174_020 0.2375989219 - - -
9 Hb_001775_130 0.2392399968 - - Prephenate dehydratase [Hevea brasiliensis]
10 Hb_120357_010 0.2431128125 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
11 Hb_002876_190 0.2451870474 transcription factor TF Family: GRAS hypothetical protein PRUPE_ppa017519mg [Prunus persica]
12 Hb_000685_100 0.2461802871 - - hypothetical protein POPTR_0001s10630g [Populus trichocarpa]
13 Hb_001115_010 0.247231615 - - PREDICTED: 4-coumarate--CoA ligase 2-like [Jatropha curcas]
14 Hb_000046_250 0.2498812482 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000011_320 0.2500872236 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
16 Hb_142382_010 0.2520920699 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
17 Hb_014096_010 0.2532245242 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
18 Hb_004241_050 0.2532671541 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
19 Hb_006326_020 0.2560834144 - - -
20 Hb_000959_150 0.2592663628 - - PREDICTED: uncharacterized protein LOC104879927 [Vitis vinifera]

Gene co-expression network

sample Hb_137350_010 Hb_137350_010 Hb_000106_060 Hb_000106_060 Hb_137350_010--Hb_000106_060 Hb_000934_180 Hb_000934_180 Hb_137350_010--Hb_000934_180 Hb_170861_010 Hb_170861_010 Hb_137350_010--Hb_170861_010 Hb_113945_010 Hb_113945_010 Hb_137350_010--Hb_113945_010 Hb_039096_010 Hb_039096_010 Hb_137350_010--Hb_039096_010 Hb_003212_020 Hb_003212_020 Hb_137350_010--Hb_003212_020 Hb_000106_060--Hb_170861_010 Hb_000106_060--Hb_113945_010 Hb_000106_060--Hb_039096_010 Hb_000106_060--Hb_000934_180 Hb_002876_190 Hb_002876_190 Hb_000106_060--Hb_002876_190 Hb_001775_130 Hb_001775_130 Hb_000106_060--Hb_001775_130 Hb_000934_180--Hb_113945_010 Hb_000934_180--Hb_170861_010 Hb_000934_180--Hb_039096_010 Hb_120357_010 Hb_120357_010 Hb_000934_180--Hb_120357_010 Hb_000934_180--Hb_002876_190 Hb_170861_010--Hb_113945_010 Hb_170861_010--Hb_039096_010 Hb_170861_010--Hb_120357_010 Hb_170861_010--Hb_002876_190 Hb_113945_010--Hb_039096_010 Hb_007161_020 Hb_007161_020 Hb_113945_010--Hb_007161_020 Hb_113945_010--Hb_002876_190 Hb_039096_010--Hb_002876_190 Hb_039096_010--Hb_001775_130 Hb_000705_050 Hb_000705_050 Hb_003212_020--Hb_000705_050 Hb_003304_090 Hb_003304_090 Hb_003212_020--Hb_003304_090 Hb_001675_020 Hb_001675_020 Hb_003212_020--Hb_001675_020 Hb_000011_320 Hb_000011_320 Hb_003212_020--Hb_000011_320 Hb_001174_020 Hb_001174_020 Hb_003212_020--Hb_001174_020 Hb_000477_020 Hb_000477_020 Hb_003212_020--Hb_000477_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.470226 0 15.4198 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.993299 0 0.525418 6.78557 1.6995

CAGE analysis