Hb_053162_010

Information

Type -
Description -
Location Contig53162: 22-913
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012072612.1
description PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053162_010 0.0 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
2 Hb_000416_120 0.3152564134 - - Putative LRR receptor-like serine/threonine-protein kinase, partial [Glycine soja]
3 Hb_130067_010 0.3154927402 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_099448_010 0.316692291 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
5 Hb_079459_010 0.3169973507 - - conserved hypothetical protein [Ricinus communis]
6 Hb_142382_010 0.3252379897 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
7 Hb_004033_020 0.3373365581 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]
8 Hb_176685_010 0.3475714584 - - receptor-type protein kinase LRK1-like [Oryza sativa Japonica Group]
9 Hb_033044_010 0.3544031733 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5-like isoform X3 [Gossypium raimondii]
10 Hb_004607_040 0.3576778326 - - ADP,ATP carrier protein, putative [Ricinus communis]
11 Hb_068804_020 0.3579680048 - - hypothetical protein AMTR_s00046p00231970 [Amborella trichopoda]
12 Hb_001660_010 0.3624853134 - - conserved hypothetical protein [Ricinus communis]
13 Hb_014175_010 0.3662568169 - - Uncharacterized protein TCM_033221 [Theobroma cacao]
14 Hb_000565_010 0.3693555727 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
15 Hb_003972_040 0.3697119635 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
16 Hb_005854_050 0.3699489812 - - conserved hypothetical protein [Ricinus communis]
17 Hb_150360_020 0.3700966682 - - PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
18 Hb_001112_020 0.3719471845 - - PREDICTED: uncharacterized protein LOC103717724, partial [Phoenix dactylifera]
19 Hb_001252_190 0.3755554992 desease resistance Gene Name: NB-ARC -
20 Hb_002267_120 0.3769384402 - - hypothetical protein B456_009G136300 [Gossypium raimondii]

Gene co-expression network

sample Hb_053162_010 Hb_053162_010 Hb_000416_120 Hb_000416_120 Hb_053162_010--Hb_000416_120 Hb_130067_010 Hb_130067_010 Hb_053162_010--Hb_130067_010 Hb_099448_010 Hb_099448_010 Hb_053162_010--Hb_099448_010 Hb_079459_010 Hb_079459_010 Hb_053162_010--Hb_079459_010 Hb_142382_010 Hb_142382_010 Hb_053162_010--Hb_142382_010 Hb_004033_020 Hb_004033_020 Hb_053162_010--Hb_004033_020 Hb_005854_050 Hb_005854_050 Hb_000416_120--Hb_005854_050 Hb_005597_010 Hb_005597_010 Hb_000416_120--Hb_005597_010 Hb_000416_120--Hb_142382_010 Hb_113803_010 Hb_113803_010 Hb_000416_120--Hb_113803_010 Hb_002267_120 Hb_002267_120 Hb_000416_120--Hb_002267_120 Hb_000416_120--Hb_130067_010 Hb_000029_100 Hb_000029_100 Hb_130067_010--Hb_000029_100 Hb_000603_070 Hb_000603_070 Hb_130067_010--Hb_000603_070 Hb_001916_080 Hb_001916_080 Hb_130067_010--Hb_001916_080 Hb_000157_080 Hb_000157_080 Hb_130067_010--Hb_000157_080 Hb_090158_010 Hb_090158_010 Hb_130067_010--Hb_090158_010 Hb_000656_190 Hb_000656_190 Hb_130067_010--Hb_000656_190 Hb_001660_010 Hb_001660_010 Hb_099448_010--Hb_001660_010 Hb_001348_220 Hb_001348_220 Hb_099448_010--Hb_001348_220 Hb_095532_010 Hb_095532_010 Hb_099448_010--Hb_095532_010 Hb_000565_010 Hb_000565_010 Hb_099448_010--Hb_000565_010 Hb_004875_040 Hb_004875_040 Hb_099448_010--Hb_004875_040 Hb_161981_010 Hb_161981_010 Hb_099448_010--Hb_161981_010 Hb_000170_180 Hb_000170_180 Hb_079459_010--Hb_000170_180 Hb_079459_010--Hb_000416_120 Hb_079459_010--Hb_142382_010 Hb_137350_010 Hb_137350_010 Hb_079459_010--Hb_137350_010 Hb_014175_010 Hb_014175_010 Hb_079459_010--Hb_014175_010 Hb_003090_230 Hb_003090_230 Hb_142382_010--Hb_003090_230 Hb_000676_380 Hb_000676_380 Hb_142382_010--Hb_000676_380 Hb_142382_010--Hb_004875_040 Hb_001856_150 Hb_001856_150 Hb_142382_010--Hb_001856_150 Hb_001775_130 Hb_001775_130 Hb_142382_010--Hb_001775_130 Hb_020805_110 Hb_020805_110 Hb_142382_010--Hb_020805_110 Hb_004125_070 Hb_004125_070 Hb_004033_020--Hb_004125_070 Hb_004033_020--Hb_005854_050 Hb_184541_010 Hb_184541_010 Hb_004033_020--Hb_184541_010 Hb_000251_020 Hb_000251_020 Hb_004033_020--Hb_000251_020 Hb_009083_030 Hb_009083_030 Hb_004033_020--Hb_009083_030 Hb_121694_010 Hb_121694_010 Hb_004033_020--Hb_121694_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0407554 0 0.220625 0 0.0763117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.111476 0 0 0.180376 0

CAGE analysis