Hb_028089_020

Information

Type -
Description -
Location Contig28089: 24786-25407
Sequence    

Annotation

kegg
ID pmum:103333732
description putative ribonuclease H protein At1g65750
nr
ID XP_008234850.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
swissprot
ID -
description -
trembl
ID M0W7P4
description Uncharacterized protein (Fragment) OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028089_020 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
2 Hb_050034_010 0.1974501254 - - PREDICTED: cullin-1 [Jatropha curcas]
3 Hb_002027_180 0.2080586603 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
4 Hb_000125_020 0.2208458521 transcription factor TF Family: mTERF -
5 Hb_010984_040 0.2226278974 - - hypothetical protein M569_17286, partial [Genlisea aurea]
6 Hb_000317_140 0.2257031617 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
7 Hb_007943_200 0.2306047968 - - Uncharacterized protein isoform 2 [Theobroma cacao]
8 Hb_100137_010 0.2315161116 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
9 Hb_000603_070 0.2342404808 - - -
10 Hb_003740_040 0.2353057418 - - Ubiquitin carboxyl-terminal hydrolase isozyme L3, putative [Ricinus communis]
11 Hb_099116_010 0.239156719 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000111_030 0.2392061613 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
13 Hb_030992_010 0.2430147883 - - acetylornithine aminotransferase, putative [Ricinus communis]
14 Hb_000481_050 0.2431163256 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
15 Hb_001518_070 0.2434386362 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002388_010 0.2436301388 - - -
17 Hb_005686_120 0.2438464286 - - -
18 Hb_002562_110 0.245158109 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
19 Hb_004466_060 0.2453704526 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
20 Hb_000168_010 0.2455886157 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_028089_020 Hb_028089_020 Hb_050034_010 Hb_050034_010 Hb_028089_020--Hb_050034_010 Hb_002027_180 Hb_002027_180 Hb_028089_020--Hb_002027_180 Hb_000125_020 Hb_000125_020 Hb_028089_020--Hb_000125_020 Hb_010984_040 Hb_010984_040 Hb_028089_020--Hb_010984_040 Hb_000317_140 Hb_000317_140 Hb_028089_020--Hb_000317_140 Hb_007943_200 Hb_007943_200 Hb_028089_020--Hb_007943_200 Hb_007456_020 Hb_007456_020 Hb_050034_010--Hb_007456_020 Hb_102591_010 Hb_102591_010 Hb_050034_010--Hb_102591_010 Hb_099116_010 Hb_099116_010 Hb_050034_010--Hb_099116_010 Hb_165402_010 Hb_165402_010 Hb_050034_010--Hb_165402_010 Hb_000168_010 Hb_000168_010 Hb_050034_010--Hb_000168_010 Hb_060391_010 Hb_060391_010 Hb_050034_010--Hb_060391_010 Hb_003992_040 Hb_003992_040 Hb_002027_180--Hb_003992_040 Hb_013358_090 Hb_013358_090 Hb_002027_180--Hb_013358_090 Hb_086765_010 Hb_086765_010 Hb_002027_180--Hb_086765_010 Hb_026228_020 Hb_026228_020 Hb_002027_180--Hb_026228_020 Hb_001829_040 Hb_001829_040 Hb_002027_180--Hb_001829_040 Hb_004117_160 Hb_004117_160 Hb_002027_180--Hb_004117_160 Hb_000481_050 Hb_000481_050 Hb_000125_020--Hb_000481_050 Hb_002562_110 Hb_002562_110 Hb_000125_020--Hb_002562_110 Hb_004669_030 Hb_004669_030 Hb_000125_020--Hb_004669_030 Hb_132180_010 Hb_132180_010 Hb_000125_020--Hb_132180_010 Hb_000671_120 Hb_000671_120 Hb_000125_020--Hb_000671_120 Hb_000016_060 Hb_000016_060 Hb_000125_020--Hb_000016_060 Hb_004525_050 Hb_004525_050 Hb_010984_040--Hb_004525_050 Hb_100137_010 Hb_100137_010 Hb_010984_040--Hb_100137_010 Hb_006634_110 Hb_006634_110 Hb_010984_040--Hb_006634_110 Hb_009083_030 Hb_009083_030 Hb_010984_040--Hb_009083_030 Hb_048702_010 Hb_048702_010 Hb_010984_040--Hb_048702_010 Hb_121694_010 Hb_121694_010 Hb_010984_040--Hb_121694_010 Hb_002168_010 Hb_002168_010 Hb_000317_140--Hb_002168_010 Hb_146675_010 Hb_146675_010 Hb_000317_140--Hb_146675_010 Hb_000015_070 Hb_000015_070 Hb_000317_140--Hb_000015_070 Hb_004709_020 Hb_004709_020 Hb_000317_140--Hb_004709_020 Hb_004466_060 Hb_004466_060 Hb_000317_140--Hb_004466_060 Hb_150023_010 Hb_150023_010 Hb_000317_140--Hb_150023_010 Hb_006153_030 Hb_006153_030 Hb_007943_200--Hb_006153_030 Hb_002477_010 Hb_002477_010 Hb_007943_200--Hb_002477_010 Hb_005694_020 Hb_005694_020 Hb_007943_200--Hb_005694_020 Hb_143629_130 Hb_143629_130 Hb_007943_200--Hb_143629_130 Hb_148130_020 Hb_148130_020 Hb_007943_200--Hb_148130_020 Hb_002735_050 Hb_002735_050 Hb_007943_200--Hb_002735_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0517315 0.283387 0.121532 1.2024 0.100759 0.758032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.120719 0.474254 0 0.235256 0.359572

CAGE analysis