Hb_015941_040

Information

Type -
Description -
Location Contig15941: 46950-56977
Sequence    

Annotation

kegg
ID csv:101225169
description L-galactono-1,4-lactone dehydrogenase, mitochondrial-like
nr
ID NP_001292704.1
description L-galactono-1,4-lactone dehydrogenase, mitochondrial [Cucumis sativus]
swissprot
ID O47881
description L-galactono-1,4-lactone dehydrogenase, mitochondrial OS=Brassica oleracea PE=1 SV=1
trembl
ID E7E016
description L-galactono-1,4-lactone dehydrogenase OS=Cucumis sativus PE=2 SV=1
Gene Ontology
ID GO:0016021
description l-galactono- -lactone mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015941_040 0.0 - - L-galactono-1,4-lactone dehydrogenase, mitochondrial [Cucumis sativus]
2 Hb_008114_040 0.1112329125 - - Fanconi anemia group D2 [Gossypium arboreum]
3 Hb_004544_040 0.1143148917 - - hypothetical protein PHAVU_010G103000g [Phaseolus vulgaris]
4 Hb_007955_050 0.1194108879 - - PREDICTED: multiple RNA-binding domain-containing protein 1 [Jatropha curcas]
5 Hb_030414_040 0.1233578218 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
6 Hb_003430_050 0.1243470643 - - PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X1 [Phoenix dactylifera]
7 Hb_007441_020 0.1311857643 - - Rab6 [Hevea brasiliensis]
8 Hb_093666_010 0.1335253195 - - BnaC05g06620D [Brassica napus]
9 Hb_183433_010 0.1337683851 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
10 Hb_026234_010 0.1343069287 - - choline monooxygenase, putative [Ricinus communis]
11 Hb_008387_010 0.1346727878 - - SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
12 Hb_000731_220 0.135079485 - - PREDICTED: derlin-2.2 [Jatropha curcas]
13 Hb_000239_060 0.1356180073 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000789_320 0.1363815723 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
15 Hb_000175_410 0.1365509332 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
16 Hb_000866_310 0.1370198314 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
17 Hb_002400_340 0.1374101286 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
18 Hb_021374_010 0.1376547954 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
19 Hb_031091_020 0.1376885406 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
20 Hb_007062_040 0.1376901 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]

Gene co-expression network

sample Hb_015941_040 Hb_015941_040 Hb_008114_040 Hb_008114_040 Hb_015941_040--Hb_008114_040 Hb_004544_040 Hb_004544_040 Hb_015941_040--Hb_004544_040 Hb_007955_050 Hb_007955_050 Hb_015941_040--Hb_007955_050 Hb_030414_040 Hb_030414_040 Hb_015941_040--Hb_030414_040 Hb_003430_050 Hb_003430_050 Hb_015941_040--Hb_003430_050 Hb_007441_020 Hb_007441_020 Hb_015941_040--Hb_007441_020 Hb_000402_150 Hb_000402_150 Hb_008114_040--Hb_000402_150 Hb_000189_600 Hb_000189_600 Hb_008114_040--Hb_000189_600 Hb_004333_040 Hb_004333_040 Hb_008114_040--Hb_004333_040 Hb_006588_060 Hb_006588_060 Hb_008114_040--Hb_006588_060 Hb_002400_340 Hb_002400_340 Hb_008114_040--Hb_002400_340 Hb_000617_230 Hb_000617_230 Hb_008114_040--Hb_000617_230 Hb_016461_020 Hb_016461_020 Hb_004544_040--Hb_016461_020 Hb_004544_040--Hb_007955_050 Hb_001408_110 Hb_001408_110 Hb_004544_040--Hb_001408_110 Hb_002874_090 Hb_002874_090 Hb_004544_040--Hb_002874_090 Hb_001558_040 Hb_001558_040 Hb_004544_040--Hb_001558_040 Hb_001307_240 Hb_001307_240 Hb_004544_040--Hb_001307_240 Hb_000795_040 Hb_000795_040 Hb_007955_050--Hb_000795_040 Hb_000996_020 Hb_000996_020 Hb_007955_050--Hb_000996_020 Hb_000373_170 Hb_000373_170 Hb_007955_050--Hb_000373_170 Hb_001925_060 Hb_001925_060 Hb_007955_050--Hb_001925_060 Hb_007955_050--Hb_000189_600 Hb_000661_120 Hb_000661_120 Hb_007955_050--Hb_000661_120 Hb_001158_160 Hb_001158_160 Hb_030414_040--Hb_001158_160 Hb_000120_210 Hb_000120_210 Hb_030414_040--Hb_000120_210 Hb_005288_070 Hb_005288_070 Hb_030414_040--Hb_005288_070 Hb_004096_240 Hb_004096_240 Hb_030414_040--Hb_004096_240 Hb_000254_100 Hb_000254_100 Hb_030414_040--Hb_000254_100 Hb_000111_170 Hb_000111_170 Hb_030414_040--Hb_000111_170 Hb_007831_010 Hb_007831_010 Hb_003430_050--Hb_007831_010 Hb_003098_070 Hb_003098_070 Hb_003430_050--Hb_003098_070 Hb_000365_230 Hb_000365_230 Hb_003430_050--Hb_000365_230 Hb_163175_010 Hb_163175_010 Hb_003430_050--Hb_163175_010 Hb_003883_060 Hb_003883_060 Hb_003430_050--Hb_003883_060 Hb_007894_150 Hb_007894_150 Hb_003430_050--Hb_007894_150 Hb_106552_020 Hb_106552_020 Hb_007441_020--Hb_106552_020 Hb_000866_310 Hb_000866_310 Hb_007441_020--Hb_000866_310 Hb_000035_110 Hb_000035_110 Hb_007441_020--Hb_000035_110 Hb_008568_020 Hb_008568_020 Hb_007441_020--Hb_008568_020 Hb_000005_220 Hb_000005_220 Hb_007441_020--Hb_000005_220 Hb_000239_060 Hb_000239_060 Hb_007441_020--Hb_000239_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.963605 0.862006 1.52119 0.867459 0.245034 0.985794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.353109 0.7845 0.31053 0.994166 0.865337

CAGE analysis