Hb_009004_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig9004: 169-2317
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26900g
description POPTRDRAFT_549273; NBS-LRR resistance gene-like protein ARGH30
nr
ID XP_012065625.1
description PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067LHA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16876 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009004_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
2 Hb_005288_100 0.1278390011 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
3 Hb_066293_010 0.1278770627 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
4 Hb_000389_170 0.1304452997 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
5 Hb_005867_050 0.1334243954 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
6 Hb_000347_320 0.1356105301 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
7 Hb_001459_020 0.1404389166 - - ankyrin repeat protein [Bruguiera gymnorhiza]
8 Hb_036790_110 0.1423489194 - - hypothetical protein JCGZ_22271 [Jatropha curcas]
9 Hb_008727_060 0.1439021708 - - Beta-glucosidase, putative [Ricinus communis]
10 Hb_003494_150 0.1466695831 - - Silicon transporter, putative [Ricinus communis]
11 Hb_007666_010 0.1479792786 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
12 Hb_005018_030 0.1510629295 - - hypothetical protein CICLE_v10019811mg [Citrus clementina]
13 Hb_000951_070 0.1536905203 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
14 Hb_057880_020 0.1558796732 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]
15 Hb_000230_490 0.1581518235 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002226_090 0.1600144399 - - Stachyose synthase precursor, putative [Ricinus communis]
17 Hb_089305_040 0.1601287191 - - -
18 Hb_169948_010 0.1612539399 - - hypothetical protein VITISV_006524 [Vitis vinifera]
19 Hb_020367_040 0.1623752599 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
20 Hb_004934_130 0.1638257576 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_009004_010 Hb_009004_010 Hb_005288_100 Hb_005288_100 Hb_009004_010--Hb_005288_100 Hb_066293_010 Hb_066293_010 Hb_009004_010--Hb_066293_010 Hb_000389_170 Hb_000389_170 Hb_009004_010--Hb_000389_170 Hb_005867_050 Hb_005867_050 Hb_009004_010--Hb_005867_050 Hb_000347_320 Hb_000347_320 Hb_009004_010--Hb_000347_320 Hb_001459_020 Hb_001459_020 Hb_009004_010--Hb_001459_020 Hb_036790_110 Hb_036790_110 Hb_005288_100--Hb_036790_110 Hb_005678_020 Hb_005678_020 Hb_005288_100--Hb_005678_020 Hb_008727_060 Hb_008727_060 Hb_005288_100--Hb_008727_060 Hb_009315_010 Hb_009315_010 Hb_005288_100--Hb_009315_010 Hb_005288_100--Hb_000389_170 Hb_005843_010 Hb_005843_010 Hb_005288_100--Hb_005843_010 Hb_125961_010 Hb_125961_010 Hb_066293_010--Hb_125961_010 Hb_003226_230 Hb_003226_230 Hb_066293_010--Hb_003226_230 Hb_169948_010 Hb_169948_010 Hb_066293_010--Hb_169948_010 Hb_000120_480 Hb_000120_480 Hb_066293_010--Hb_000120_480 Hb_162676_010 Hb_162676_010 Hb_066293_010--Hb_162676_010 Hb_057880_020 Hb_057880_020 Hb_066293_010--Hb_057880_020 Hb_000389_170--Hb_008727_060 Hb_001699_110 Hb_001699_110 Hb_000389_170--Hb_001699_110 Hb_020367_040 Hb_020367_040 Hb_000389_170--Hb_020367_040 Hb_000708_020 Hb_000708_020 Hb_000389_170--Hb_000708_020 Hb_002421_150 Hb_002421_150 Hb_000389_170--Hb_002421_150 Hb_004117_320 Hb_004117_320 Hb_005867_050--Hb_004117_320 Hb_010402_040 Hb_010402_040 Hb_005867_050--Hb_010402_040 Hb_022693_080 Hb_022693_080 Hb_005867_050--Hb_022693_080 Hb_002226_090 Hb_002226_090 Hb_005867_050--Hb_002226_090 Hb_004979_080 Hb_004979_080 Hb_005867_050--Hb_004979_080 Hb_000061_440 Hb_000061_440 Hb_005867_050--Hb_000061_440 Hb_000271_130 Hb_000271_130 Hb_000347_320--Hb_000271_130 Hb_007666_010 Hb_007666_010 Hb_000347_320--Hb_007666_010 Hb_000347_320--Hb_000120_480 Hb_000230_490 Hb_000230_490 Hb_000347_320--Hb_000230_490 Hb_000347_320--Hb_066293_010 Hb_000920_100 Hb_000920_100 Hb_000347_320--Hb_000920_100 Hb_002620_040 Hb_002620_040 Hb_001459_020--Hb_002620_040 Hb_007718_040 Hb_007718_040 Hb_001459_020--Hb_007718_040 Hb_001459_020--Hb_057880_020 Hb_089305_040 Hb_089305_040 Hb_001459_020--Hb_089305_040 Hb_000920_340 Hb_000920_340 Hb_001459_020--Hb_000920_340 Hb_149345_010 Hb_149345_010 Hb_001459_020--Hb_149345_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.144024 0.0754216 0.211515 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0175147 0 0.00696728 0.592452

CAGE analysis