Hb_006040_070

Information

Type -
Description -
Location Contig6040: 52858-54633
Sequence    

Annotation

kegg
ID bvg:809556
description BevupMp031; orf107b
nr
ID NP_064004.1
description orf107b gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID G2XLY9
description Uncharacterized protein OS=Beta macrocarpa GN=orf107b PE=4 SV=1
Gene Ontology
ID GO:0005739
description orf107b gene product

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50698: 50539-52901 , PASA_asmbl_50700: 53628-54528
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006040_070 0.0 - - orf107b gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
2 Hb_027402_100 0.1621354315 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
3 Hb_002687_150 0.1649622976 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
4 Hb_172676_010 0.1692464805 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
5 Hb_002910_010 0.1765356713 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
6 Hb_001345_030 0.1775319831 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
7 Hb_015882_020 0.1780593664 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
8 Hb_000465_100 0.1794136762 - - catalytic, putative [Ricinus communis]
9 Hb_007416_170 0.1864477176 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
10 Hb_001141_190 0.1870877216 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000771_070 0.1874582632 - - PREDICTED: plastidial pyruvate kinase 4, chloroplastic [Jatropha curcas]
12 Hb_147873_010 0.1888590133 - - PREDICTED: uncharacterized protein LOC102595311 [Solanum tuberosum]
13 Hb_000369_070 0.1900418285 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
14 Hb_000318_410 0.1924538138 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
15 Hb_132840_090 0.1931199272 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
16 Hb_000522_130 0.1933442115 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
17 Hb_077995_010 0.19426901 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
18 Hb_002874_170 0.1947778117 - - PREDICTED: L-arabinokinase-like isoform X3 [Jatropha curcas]
19 Hb_000027_130 0.195256252 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
20 Hb_005539_100 0.1953417513 - - nucleoside transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_006040_070 Hb_006040_070 Hb_027402_100 Hb_027402_100 Hb_006040_070--Hb_027402_100 Hb_002687_150 Hb_002687_150 Hb_006040_070--Hb_002687_150 Hb_172676_010 Hb_172676_010 Hb_006040_070--Hb_172676_010 Hb_002910_010 Hb_002910_010 Hb_006040_070--Hb_002910_010 Hb_001345_030 Hb_001345_030 Hb_006040_070--Hb_001345_030 Hb_015882_020 Hb_015882_020 Hb_006040_070--Hb_015882_020 Hb_132840_090 Hb_132840_090 Hb_027402_100--Hb_132840_090 Hb_003106_240 Hb_003106_240 Hb_027402_100--Hb_003106_240 Hb_004218_080 Hb_004218_080 Hb_027402_100--Hb_004218_080 Hb_000753_140 Hb_000753_140 Hb_027402_100--Hb_000753_140 Hb_000318_410 Hb_000318_410 Hb_027402_100--Hb_000318_410 Hb_011457_080 Hb_011457_080 Hb_027402_100--Hb_011457_080 Hb_001008_160 Hb_001008_160 Hb_002687_150--Hb_001008_160 Hb_147873_010 Hb_147873_010 Hb_002687_150--Hb_147873_010 Hb_000333_120 Hb_000333_120 Hb_002687_150--Hb_000333_120 Hb_008253_040 Hb_008253_040 Hb_002687_150--Hb_008253_040 Hb_000856_410 Hb_000856_410 Hb_002687_150--Hb_000856_410 Hb_005539_100 Hb_005539_100 Hb_172676_010--Hb_005539_100 Hb_006052_060 Hb_006052_060 Hb_172676_010--Hb_006052_060 Hb_002073_020 Hb_002073_020 Hb_172676_010--Hb_002073_020 Hb_002874_170 Hb_002874_170 Hb_172676_010--Hb_002874_170 Hb_061908_020 Hb_061908_020 Hb_172676_010--Hb_061908_020 Hb_001951_240 Hb_001951_240 Hb_172676_010--Hb_001951_240 Hb_000649_300 Hb_000649_300 Hb_002910_010--Hb_000649_300 Hb_001053_200 Hb_001053_200 Hb_002910_010--Hb_001053_200 Hb_008103_100 Hb_008103_100 Hb_002910_010--Hb_008103_100 Hb_000027_130 Hb_000027_130 Hb_002910_010--Hb_000027_130 Hb_000771_070 Hb_000771_070 Hb_002910_010--Hb_000771_070 Hb_002910_010--Hb_002073_020 Hb_000397_090 Hb_000397_090 Hb_001345_030--Hb_000397_090 Hb_000363_110 Hb_000363_110 Hb_001345_030--Hb_000363_110 Hb_077995_010 Hb_077995_010 Hb_001345_030--Hb_077995_010 Hb_000172_080 Hb_000172_080 Hb_001345_030--Hb_000172_080 Hb_004166_010 Hb_004166_010 Hb_001345_030--Hb_004166_010 Hb_000359_080 Hb_000359_080 Hb_001345_030--Hb_000359_080 Hb_000705_130 Hb_000705_130 Hb_015882_020--Hb_000705_130 Hb_033312_090 Hb_033312_090 Hb_015882_020--Hb_033312_090 Hb_000522_130 Hb_000522_130 Hb_015882_020--Hb_000522_130 Hb_000027_060 Hb_000027_060 Hb_015882_020--Hb_000027_060 Hb_001534_150 Hb_001534_150 Hb_015882_020--Hb_001534_150 Hb_004030_070 Hb_004030_070 Hb_015882_020--Hb_004030_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.196759 9.02979 4.03006 1.16101 0.235909 0.815769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.551211 1.67823 2.97457

CAGE analysis